Royal Netherlands Institute for Sea Research

Department of Marine Microbiology & Biogeochemistry

Studying the microorganisms and biogeochemical processes of marine environments

The MMB Department studies microbial communities in all types of marine environments, from estuaries to the deep ocean, from the deep past to the present. Using field and experimental approaches and a variety of analytical, (bio)chemical and genomic techniques, we study the diversity, evolution, physiology and activity of eukaryotes, prokaryotes and viruses in diverse marine environmental settings. We do so by a variety of analytical chemical, biochemical and modern genomic techniques.

News and updates

Friday 08 November 2024
Marine microbes are our link to 'System Earth'
They produce half of all the oxygen in the oceans and the atmosphere, they eat a lot of greenhouse gases, but under oxygen-free conditions, they also produce methane and other greenhouse gases. In other words, bacteria and other marine microbes are a…
Tuesday 29 October 2024
Surprising findings on bacterial growth as a threat to coral reefs
A new study by an international team of researchers from NIOZ and other institutes, led by the University of Bremen suggests that on algae-dominated coral reefs, it is not the algae but the corals themselves that may contribute to the growth of…
Thursday 24 October 2024
Antarctic sea is loaded with unknown viruses
Out of thousands of marine viruses that were discovered in Antarctic waters in the past two years, 75 percent was new to science. That is shown in a paper that was published in Nature Communications on 24 October 2024, by NIOZ PhD candidate Gonçalo…

Expertise

Biogeochemistry Reconstructing environmental parameters from the geological past to the present, based on organic molecules produced by microorganisms. This provides information to improve predictions on future oceans and climate.
Microbiology Studing microbial eukaryotes, prokaryotes and their viruses while characterizing their diversity, physiology, metabolism, and biogeochemical activity across a variety of marine habitats. This is done by laboratory experiments and field surveys.
Molecular Ecology and Evolution Determining the diversity, gene regulation, microbial interactions and evolution of marine microorganisms. Research in this field is supported by work in the molecular laboratory and with computational approaches.

Employees

 
Villanueva, Laura
Head of Scientific Department
 
Amaral - Zettler, Linda
Research Leader
 
Bale, Nicole
Head of Analytical Laboratory
 
Bleijswijk Tierens Verhagen van, Judith
Head of Analytical Laboratory
 
Bolhuis, Henk
Senior Scientist
 
Brussaard, Corina
Senior Research Leader
 
Engelmann, Julia
Senior Scientist
 
Haas, Andi
Senior Scientist
 
Hopmans, Ellen
Head of Analytical Laboratory
 
Meer van der, Marcel
Senior Scientist
 
Niemann, Helge
Senior Research Leader
 
Offre, Pierre
Senior Scientist
 
Rush, Darci
Senior Scientist
 
Schleyer, Guy
Tenure track Scientist
 
Schouten, Stefan
Senior Research Leader
 
Sinninghe Damsté, Jaap
Senior Research Leader
 
Spang, Anja
Research Leader
 
Amar, Or
PhD student
 
Barnes, Will
PhD student
 
Boer, Meine
PhD student
 
Chopra, Varun
PhD student
 
Corbett, Lia
PhD student
 
Delre, Annalisa
PhD student
 
Goodman, Jamie
PhD student
 
Huang, Wencong
PhD student
 
Novik, Olga
PhD student
 
Schellenberg, Lisa
PhD student
 
Stanca, Ioana
PhD student
 
Abdala Asbun, Alejandro
Senior Research Assistant
 
Beer de, Rob
Research Assistant
 
Bommel van, Ronald
Research Assistant
 
Brouwer, Maartje
Senior Research Assistant
 
Dorhout, Denise
Senior Research Assistant
 
Garritsen - van Arnhem, Eveline
Research Assistant
 
Koenen, Michel
Senior Research Assistant
 
Lamers, Alma
Laboratory Assistant
 
Matviiets, Nikolai
Research Assistant
 
Mets, Anchelique
Senior Laboratory Assistant
 
Ndhlovu, Rachel
Research Assistant
 
Noordeloos, Anna
Senior Research Assistant
 
Ossebaar, Jort
Senior Research Assistant
 
Peters, Laura
Management Assistant
 
Pont, Sven
Research Assistant
 
Posthuma, Ilsa
Research Assistant
 
Reitsma, Wietse
Research Assistant
 
Verweij, Monique
Senior Research Assistant
 
Vreugdenhil, Sanne
Research Assistant
 
Witte, Harry
Senior Research Assistant
 
Dons, Bram
Trainee
 
Dulfer, Jay
Trainee
 
Franz, Marleen
Trainee
 
Sinnige, Jamie
Trainee
 
Tensen, Tijn
Trainee
 
Theirlynck, Tom
Guest researcher
 
Zeghal, Emna
Guest researcher

Linked Projects

UUNIOZ_The role of Marine Flavobacteria
Supervisor
Pierre Offre
Funder
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025
UUNIOZ_Harmful Algal Blooms
Supervisor
Laura Villanueva
Funder
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025
UUNIOZ_The origin and diversification of eukaryotic metabolisms
Supervisor
Anja Spang
Funder
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025
UUNIOZ_Using isotopic indicators
Supervisor
Marcel van der Meer
Funder
Utrecht University
Project duration
1 Jan 2021 - 31 Dec 2025

Linked publications

  • 2024
    Alter, K.; Jacobs, P.; Delre, A.; Rasch, B.; Philippart, C.J.M.; Peck, M.A. (2024). Oyster larvae used for ecosystem restoration benefit from increased thermal fluctuation. Mar. Pollut. Bull. 198: 115750. https://dx.doi.org/10.1016/j.marpolbul.2023.115750
    Baxter, A.J.; Peterse, F.; Verschuren, D.; Maitituerdi, A.; Waldmann, N.; Sinninghe Damsté, J.S. (2024). Disentangling influences of climate variability and lake-system evolution on climate proxies derived from isoprenoid and branched glycerol dialkyl glycerol tetraethers (GDGTs): the 250 kyr Lake Chala record. Biogeosciences 21(11): 2877-2908. https://dx.doi.org/10.5194/bg-21-2877-2024
    Bolhuis, H.; Grego, M. (2024). Cryopreservation and recovery of a complex hypersaline microbial mat community. Cryobiology 114: 104859. https://dx.doi.org/10.1016/j.cryobiol.2024.104859
    Bravo, H.; Dromard, C.R.; van der Meer, M.T.J.; Schleimer, A.; van der Meij, S.E.T. (2024). Dining on corals: stable isotope evidence for close trophic connection between gall crabs (Cryptochiridae) and their stony coral hosts. Symbiosis 92(1): 51-62. https://dx.doi.org/10.1007/s13199-023-00968-y
    Read more
    Campana, S.; Arts, M.G.I.; Díez-Vives, C.; Mueller, B.; Bang, C.; Riesgo, A.; Haas, A.F.; Muyzer, G.; de Goeij, J.M. (2024). Sponges on shifting reefs: holobionts show similar molecular and physiological responses to coral versus macroalgal food. Front. Mar. Sci. 11: 1298922. https://dx.doi.org/10.3389/fmars.2024.1298922
    Chen, S.; Xie, Z.-X.; Yan, K.-Q.; Chen, J.-W.; Li, D.-X.; Wu, P.-F.; Peng, L.; Lin, L.; Dong, C.-M.; Zhao, Z.; Fan, G.-Y.; Liu, S.-Q.; Herndl, G.; Wang, D.-Z. (2024). Functional vertical connectivity of microbial communities in the ocean. Science Advances 10(21): eadj8184. https://dx.doi.org/10.1126/sciadv.adj8184
    de Groot, T.; Kalenitchenko, D.; Moser, M.; Argentino, C.; Panieri, G.; Lindgren, M.; Dølven, K.O.; Ferré, B.; Svenning, M.M.; Niemann, H. (2024). Methanotroph activity and connectivity between two seep systems north off Svalbard. Front. Earth Sci. 12: 1287226. https://dx.doi.org/10.3389/feart.2024.1287226
    de Vogel, F.A.; Goudriaan, M.; Zettler, E.R.; Niemann, H.; Eich, A.; Weber, M.; Lott, C.; Amaral-Zettler, L.A. (2024). Biodegradable plastics in Mediterranean coastal environments feature contrasting microbial succession. Sci. Total Environ. 928: 172288. https://dx.doi.org/10.1016/j.scitotenv.2024.172288
    Ding, S.; Grossi, V.; Hopmans, E.C.; Bale, N.J.; Cravo-Laureau, C.; Sinninghe Damsté, J.S. (2024). Nitrogen and sulfur for phosphorus: Lipidome adaptation of anaerobic sulfate-reducing bacteria in phosphorus-deprived conditions. Proc. Natl. Acad. Sci. U.S.A. 121(24): e2400711121. https://dx.doi.org/10.1073/pnas.2400711121
    Ding, S.; Hamm, J.N.; Bale, N.J.; Sinninghe Damsté, J.S.; Spang, A. (2024). Selective lipid recruitment by an archaeal DPANN symbiont from its host. Nature Comm. 15(1): 3405. https://dx.doi.org/10.1038/s41467-024-47750-2
    Egas, R.A.; Sahonero Canavesi, D.; Bale, N.J.; Koenen, M.; Yildiz, C.; Villanueva, L.; Sousa, D.Z.; Sánchez-Andrea, I. (2024). Acetic acid stress response of the acidophilic sulfate reducer Acididesulfobacillus acetoxydans. Environ. Microbiol. 26(2): e16565. https://dx.doi.org/10.1111/1462-2920.16565
    Ersoy, S.; Beardsworth, C.E; Duran, E.; van der Meer, M.T.J.; Piersma, T.; Groothuis, T.G.G.; Bijleveld, A. (2024). Pathway for personality development: juvenile red knots vary more in diet and exploratory behaviour than adults. Anim. Behav. 208: 31-40. https://dx.doi.org/10.1016/j.anbehav.2023.11.018
    Fadeev, E.; Hennenfeind, J.H.; Amano, C.; Zhao, Z.; Klun, K.; Herndl, G.; Tinta, T. (2024). Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. Appl. Environ. Microbiol. 9(2). https://dx.doi.org/10.1128/msystems.01264-23
    Goudriaan, M.; Zeghal, E.; Witte, H.J.; Vaksmaa, A.; Niemann, H. (2024). Differentiation of bacterial communities on five common plastics after six days of exposure to Caribbean coastal waters. Environmental Advances 16: 100518. https://dx.doi.org/10.1016/j.envadv.2024.100518
    Greening, C.; Cabotaje, P.R.; Valentin A., L.E.; Leung, P.M.; Land, H.; Rodrigues-Oliveira, T.; Ponce-Toledo, R.I.; Senger, M.; Klamke, M.A.; Milton, M.; Lappan, R.; Mullen, S.; West-Roberts, J.; Mao, J.; Song, J.; Schoelmerich, M.; Stairs, C.W.; Schleper, C.; Grinter, R.; Spang, A.; Banfield, J.F.; Berggren, G. (2024). Minimal and hybrid hydrogenases are active from archaea. Cell 187(13): 3357-3372.e19. https://dx.doi.org/10.1016/j.cell.2024.05.032
    Hopmans, E.C.; Grossi, V.; Sahonero Canavesi, D.; Bale, N.J.; Cravo-Laureau, C.; Sinninghe Damsté, J.S (2024). Mono- to tetra-alkyl ether cardiolipins in a mesophilic, sulfate-reducing bacterium identified by UHPLC-HRMSn: a novel class of membrane lipids. Front. Microbiol. 15: 1404328. https://dx.doi.org/10.3389/fmicb.2024.1404328
    Karancz, S.; de Nooijer, L.J.; Brummer, G.-J.; Lattaud, J.; Haghipour, N.; Rosenthal, Y.; Reichart, G.-J. (2024). Impact of seawater inorganic carbon chemistry on element incorporation in foraminiferal shell carbonate. Geochem. Geophys. Geosyst. 25(4): e2023GC011302. https://dx.doi.org/10.1029/2023gc011302
    Koppelle, S.; Ivankovic, M.; Bengtsson, M.M.; Preiler, C.; Huisman, J.; Brussaard, C.; Engelmann, J.C.; Ptacnik, R.; Wilken, S. (2024). Contrasting responses of different mixotrophic protists to light and nutrient availability. Limnol. Oceanogr. 69(5): 1233-1246. https://dx.doi.org/10.1002/lno.12565
    Martin, C.; Richter, N.; Lloren, R.; Amaral-Zettler, L.; Dubois, N. (2024). Machine learning reveals that sodium concentration and temperature influence alkenone occurrence in Swiss and worldwide freshwater lakes. Front. Earth Sci. 12: 1409389. https://dx.doi.org/10.3389/feart.2024.1409389
    Martin, C.; Richter, N.; Lloren, R.; Dubois, N. (2024). Impact of saponification and silver-nitrate purification on lacustrine alkenone distributions and alkenone-based indices. J. Chromatogr. 1715: 464576. https://dx.doi.org/10.1016/j.chroma.2023.464576
    Masdeu-Navarro, M.; Mangot, J.-F.; Xue, L.; Cabrera-Brufau, M.; Kieber, D.J.; Rodriguez-Ros, P.; Gardner, S.G.; Bergauer, K.; Herndl, G.; Marrasé, C.; Simó, R. (2024). Diel variation of seawater volatile organic compounds, DMSP-related compounds, and microbial plankton inside and outside a tropical coral reef ecosystem. Front. Mar. Sci. 11: 1341619. https://dx.doi.org/10.3389/fmars.2024.1341619
    Mendonça, I.R.W.; Theirlynck, T.; Zettler, E.R.; Amaral-Zettler, L.A.; Oliveira, M.C. (2024). Microbiome changes in a stranding simulation of the holopelagic macroalgae Sargassum natans and Sargassum fluitans. Ocean and Coastal Research 72: e24037. https://dx.doi.org/10.1590/2675-2824072.23111
    Meyer, V.D.; Pätzold, J.; Mollenhauer, G.; Castañeda, I.S; Schouten, S.; Schefuß, E. (2024). Evolution of winter precipitation in the Nile river watershed since the last glacial. Clim. Past 20(3): 523-546. https://dx.doi.org/10.5194/cp-20-523-2024
    Moros, M.; Kotilainen, A.T.; Snowball, I.; Neumann, T.; Perner, Kerstin; Meier, H.E.M.; Papenmeier, S.; Kolling, H.; Leipe, T.; Sinninghe Damsté, J.S.; Schneider, R. (2024). Giant saltwater inflow in AD 1951 triggered Baltic Sea hypoxia. Boreas 53(2): 125-138. https://dx.doi.org/10.1111/bor.12643
    Orel, N.; Fadeev, E.; Herndl, G.J.; Turk, V.; Tinta, T. (2024). Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii. BMC Genom. 25(1). https://dx.doi.org/10.1186/s12864-024-10062-2
    Peng, X.F.; Amend, A.S.; Baltar, F.; Blanco-Bercial, L.; Breyer, E.; Burgaud, G.; Cunliffe, M.; Edgcomb, V.P.; Grossart, H.-P.; Mara, P.; Masigol, H.; Pang, K.-L.; Retter, A.; Roberts, C.; van Bleijswijk, J.; Walker, A.K.; Whitner, S. (2024). Planktonic Marine Fungi: A Review. JGR: Biogeosciences 129(3): e2023JG007887. https://dx.doi.org/10.1029/2023jg007887
    Rodríguez-Mejía, J.L.; Hidalgo-Manzano, I.A.; Muriel-Millán, L.F.; Rivera-Gomez, N.; Sahonero Canavesi, D.; Castillo, E.; Pardo-Lopez, L. (2024). A novel thermo-alkaline stable GDSL/SGNH esterase with broad substrate specificity from a deep-sea Pseudomonas sp. Mar. Biotechnol. 26(3): 447-459. https://dx.doi.org/10.1007/s10126-024-10308-w
    Salazar Alekseyeva, K.; Herndl, G.; Baltar, F. (2024). Influence of salinity on the extracellular enzymatic activities of marine pelagic fungi. Journal of Fungi 10(2): 152. https://dx.doi.org/10.3390/jof10020152
    Si, W.; Novak, J.; Richter, N.; Polissar, P.; Ma, R.; Santos, E.; Nirenberg, J.; Herbert, T.D.; Aubry, M.-P. (2024). Alkenone-derived estimates of Cretaceous pCO2. Geology (Boulder Colo.) 52(7): 555-559. https://dx.doi.org/10.1130/g51939.1
    Sorokin, D.Y.; Elcheninov, A.G.; Bale, N.; Sininghe Damsté, J. ; Kublanov, I.V. (2024). Natronosalvus hydrolyticus sp. nov., a beta-1,3-glucan utilizing natronoarchaeon from hypersaline soda lakes. Syst. Appl. Microbiol. 47(2-3): 126514. https://dx.doi.org/10.1016/j.syapm.2024.126514
    Sorokin, D.Y.; Elcheninov, A.G.; Bale, N.J.; Sinninghe Damsté, J.S; Kublanov, I.V. (2024). Natronoglomus mannanivorans gen. nov., sp. nov., beta-1,4-mannan utilizing natronoarchaea from hypersaline soda lakes. Front. Microbiol. 15: 1364606. https://dx.doi.org/10.3389/fmicb.2024.1364606
    Sparagon, W.J.; Arts, M.G.I.; Quinlan, Z.A.; Wegley Kelly, L.; Koester, I.; Comstock, J.; Bullington, J.A.; Carlson, C.A.; Dorrestein, P.C.; Aluwihare, L.I.; Haas, A.F.; Nelson, C.E. (2024). Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation. Communications Biology 7(1): 160. https://dx.doi.org/10.1038/s42003-023-05730-0
    Thobor, B.M.; Tilstra, A.; Mueller, B.; Haas, A.; Hehemann, J.-H.; Wild, C. (2024). Mucus carbohydrate composition correlates with scleractinian coral phylogeny. NPG Scientific Reports 14(1): 14019. https://dx.doi.org/10.1038/s41598-024-64828-5
    Thompson, C.; Ortmann, A.C.; Bolhuis, H.; Makhalanyane, T.P.; Thompson, F. (2024). Harnessing marine microbiomes to develop a sustainable, all‐Atlantic bioeconomy. International Journal of Advanced Life Sciences 3(2): 163-166. https://dx.doi.org/10.1002/mlf2.12124
    Timmis, K.; Hallsworth, J.E.; McGenity, T.J.; Armstrong, R.; Colom, M.F.; Karahan, Z.C.; Chavarría, M.; Bernal, P.; Boyd, E.S.; Ramos, J.L.; Kaltenpoth, M.; Pruzzo, C.; Clarke, G.; López‐Garcia, P.; Yakimov, M.M.; Perlmutter, J.; Greening, C.; Eloe‐Fadrosh, E.; Verstraete, W.; Nunes, O.C.; Kotsyurbenko, O.; Nikel, P.I.; Scavone, P.; Häggblom, M.M.; Lavigne, R.; Le Roux, F.; Timmis, J.K.; Parro, V.; Michán, C.; García, J.L.; Casadevall, A.; Payne, S.M.; Frey, J.; Koren, O.; Prosser, J.I.; Lahti, L.; Lal, R.; Anand, S.; Sood, U.; Offre, P.; Bryce, C.C.; Mswaka, A.Y.; Jores, J.; Kaçar, B.; Blank, L.M.; Maaßen, N.; Pope, P.B.; Banciu, H.L.; Armitage, J.; Lee, S.Y.; Wang, F.; Makhalanyane, T.P.; Gilbert, J.A.; Wood, T.K.; Vasiljevic, B.; Soberón, M.; Udaondo, Z.; Rojo, F.; Tamang, J.P.; Giraud, T.; Ropars, J.; Ezeji, T.; Müller, V.; Danbara, H.; Averhoff, B.; Sessitsch, A.; Partida‐Martínez, L.P.; Huang, W.; Molin, S.; Junier, P.; Amils, R.; Wu, X.; Ron, E.; Erten, H.; de Martinis, E.C.P.; Rapoport, A.; Öpik, M.; Pokatong, W.D.R.; Stairs, C.; Amoozegar, M.A.; Serna, J.G. (2024). A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society. Microbial Biotechnology 17(5): e14456. https://dx.doi.org/10.1111/1751-7915.14456
    Ungerhofer, K.A.; Plümper, O.; Preiner, M.; Reichart, G.-J.; Kraal, P. (2024). Coupled carbon‑iron‑phosphorus cycling in the Rainbow hydrothermal vent field. Chem. Geol. 650: 121994. https://dx.doi.org/10.1016/j.chemgeo.2024.121994
    Vaksmaa, A.; Vielfaure, H.; Polerecky, L.; Kienhuis, M.V.M.; van der Meer, M.T.J.; Pflüger, T.; Egger, M.; Niemann, H. (2024). Biodegradation of polyethylene by the marine fungus Parengyodontium album. Sci. Total Environ. 934: 172819. https://dx.doi.org/10.1016/j.scitotenv.2024.172819
    van Kemenade, Z.R.; Erdem, Z.; Hopmans, E.C.; Sinninghe Damsté, J.S; Rush, D. (2024). Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary. Biogeosciences 21(6): 1517-1532. https://dx.doi.org/10.5194/bg-21-1517-2024
    Varma, D.; Hopmans, E.C.; van Kemenade, Z.R.; Kusch, S.; Berg, S.; Bale, N.J.; Sangiorgi, F.; Reichart, G.-J.; Sinninghe Damsté, J.S; Schouten, S. (2024). Evaluating isoprenoidal hydroxylated GDGT-based temperature proxies in surface sediments from the global ocean. Geochim. Cosmochim. Acta 370: 113-127. https://dx.doi.org/10.1016/j.gca.2023.12.019
    Varma, D.; van der Meer, M.T.J.; Reichart, G.-J.; Schouten, S. (2024). Impact of water depth on the distributions and proxies of isoprenoidal hydroxylated GDGTs in the Mediterranean Sea and the Red Sea. Org. Geochem. 194: 104780. https://dx.doi.org/10.1016/j.orggeochem.2024.104780
    Wang, K.J.; Huang, Y.; Kartzinel, T.R.; Majaneva, M.; Richter, N.; Liao, S.; Andresen, C.S.; Vermassen, F. (2024). Group 2i Isochrysidales thrive in marine and lacustrine systems with ice cover. NPG Scientific Reports 14(1): 11449. https://dx.doi.org/10.1038/s41598-024-62162-4
    Witkowski, C.R.; von der Heydt, A.S.; Valdes, P.J.; van der Meer, M.T.J.; Schouten, S.; Sinninghe Damsté, J.S. (2024). Continuous sterane and phytane δ13C record reveals a substantial pCO2 decline since the mid-Miocene. Nature Comm. 15(1): 5192. https://dx.doi.org/10.1038/s41467-024-47676-9
    Wu, L.-Y.; Wijesekara, Y.; Piedade, G.; Pappas, N.; Brussaard, C.P.D.; Dutilh, B.E. (2024). Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome Biol. 25(1): 97. https://dx.doi.org/10.1186/s13059-024-03236-4
    Yadav, S.; Koenen, M.; Bale, N.; Reitsma, W.; Engelmann, J.C.; Stefanova, K.; Sinninghe Damsté, J.S; Villanueva, L. (2024). Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria. Microbiome 12(1): 98. https://dx.doi.org/10.1186/s40168-024-01816-x
    Zhang, X.; Wang, Y.; Wang, Z.; Zhao, M.; Fang, Y.; Ding, S.; Xiao, W.; Yu, C.; Wang, X.; Xu, Y. (2024). Heterogenous distribution and burial flux of black carbon in Chinese lakes and its global implication. Sci. Total Environ. 906: 167687. https://dx.doi.org/10.1016/j.scitotenv.2023.167687
    Zhao, Z.; Amano, C.; Reinthaler, T.; Orellana, M.V.; Herndl, G. (2024). Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. Science Advances 10(20): eadn5143. https://dx.doi.org/10.1126/sciadv.adn5143
    Zhao, Z.; Baltar, F.; Herndl, G. (2024). Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Environ. Microbiol. 12(5). https://dx.doi.org/10.1128/spectrum.03036-23
    Zhemchuzhnikov, M.K.; Zhemchuzhnikova, E.A.; Lameris, T.K.; van Bleijswijk, J.D.L.; Golovnyuk, V.V.; ten Horn, J.; Kutcherov, D.; Popovkina, A.B.; Soloviev, M.Y.; Sukhova, M.A.; Witte, H.J.; van Gils, J.A. (2024). Disentangling the diet composition of chicks of Arctic shorebirds provides a new perspective on trophic mismatches. Food Webs 39: e00349. https://dx.doi.org/10.1016/j.fooweb.2024.e00349
    Zuffa, S.; Schmid, R.; Bauermeister, A.; P. Gomes, P.W.; Caraballo-Rodriguez, A.M.; El Abiead, Y.; Aron, A.T.; Gentry, E.C.; Zemlin, J.; Meehan, M.J.; Avalon, N.E.; Cichewicz, R.H.; Buzun, E.; Terrazas, M.C.; Hsu, C.-Y.; Oles, R.; Ayala, A.V.; Zhao, J.; Chu, H.; Kuijpers, M.C.M.; Jackrel, S.L.; Tugizimana, F.; Nephali, L.P.; Dubery, I.A.; Madala, N.E.; Moreira, E.A.; Costa-Lotufo, L.V.; Lopes, N.P.; Rezende-Teixeira, P.; Jimenez, P.C.; Rimal, B.; Patterson, A.D.; Traxler, M.F.; Pessotti, R. de Cassia; Alvarado-Villalobos, D.; Tamayo-Castillo, G.; Chaverri, P.; Escudero-Leyva, E.; Quiros-Guerrero, L.-M.; Bory, A.J.; Joubert, J.; Rutz, A.; Wolfender, J.-L.; Allard, P.-M.; Sichert, A.; Pontrelli, S.; Pullman, B.S.; Bandeira, N.; Gerwick, W.H.; Gindro, K.; Massana-Codina, J.; Wagner, B.C.; Forchhammer, K.; Petras, D.; Aiosa, N.; Garg, N.; Liebeke, M.; Bourceau, P.; Kang, K.B.; Gadhavi, H.; de Carvalho, L.P.S.; Silva dos Santos, M.; Pérez-Lorente, A.I.; Molina-Santiago, C.; Romero, D.; Franke, R.; Brönstrup, M.; Vera Ponce de León, A.; Pope, P.B.; La Rosa, S.L.; La Barbera, G.; Roager, H.M.; Laursen, M.F.; Hammerle, F.; Siewert, B.; Peintner, U.; Licona-Cassani, C.; Rodriguez-Orduña, L.; Rampler, E.; Hildebrand, F.; Koellensperger, G.; Schoeny, H.; Hohenwallner, K.; Panzenboeck, L.; Gregor, R.; O’Neill, E.C.; Roxborough, E.T.; Odoi, J.; Bale, N.J.; Ding, S.; Sinninghe Damsté, J.S.; Guan, X.L.; Cui, J.J.; Ju, K.-S.; Silva, D.B.; Silva, F.M.R.; da Silva, G.F.; Koolen, H.H.F.; Grundmann, C.; Clement, J.A.; Mohimani, H.; Broders, K.; McPhail, K.L.; Ober-Singleton, S.E.; Rath, C.M.; McDonald, D.; Knight, R.; Wang, M.; Dorrestein, P.C. (2024). microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nature Microbiology 9(2): 336-345. https://dx.doi.org/10.1038/s41564-023-01575-9
  • 2023
    Aylward, F.O.; Abrahão, J.S.; Brussaard, C.P.D.; Fischer, M.G.; Moniruzzaman, M.; Ogata, H.; Suttle, C.A. (2023). Taxonomic update for giant viruses in the order Imitervirales (phylum Nucleocytoviricota). Archives of Virology 168(11): 283. https://dx.doi.org/10.1007/s00705-023-05906-3
    Baer, J.L.; Carilli, J.; Chadwick, B.; Hatay, M.; van der Geer, A.; Scholten, Y.; Barnes, W.; Aquino, J.; Ballard, A.; Little, M.; Brzenski, J.; Liu, X.; Rosen, G.; Wang, P.-F.; Castillo, J.; Haas, A.F.; Hartmann, A.C.; Rohwer, F. (2023). Coral reef arks: An In Situ mesocosm and toolkit for assembling reef communities. Jove-Journal of Visualized Experiments 191: e64778. https://dx.doi.org/10.3791/64778
    Baltar, F.; Martínez-Pérez, C.; Amano, C.; Vial, M.; Robaina-Estévez, S.; Reinthaler, T.; Herndl, G.; Zhao, Z.; Logares, R.; Morales, S.E.; González, J.M. (2023). A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean. Nature Microbiology 8(6): 1137-1148. https://dx.doi.org/10.1038/s41564-023-01374-2
    Baxter, A.J.; Verschuren, D.; Peterse, F.; Miralles, D.G.; Martin-Jones, C.M.; Maitituerdi, A.; Van der Meeren, T.; Van Daele, M.; Lane, C.S.; Haug, G.H.; Olago, D.O.; Sinninghe Damsté, J.S. (2023). Reversed Holocene temperature–moisture relationship in the Horn of Africa. Nature (Lond.) 620(7973): 336-343. https://dx.doi.org/10.1038/s41586-023-06272-5
    Beltran, L.C.; Cvirkaite-Krupovic, V.; Miller, J.; Wang, F.; Kreutzberger, M.A.B.; Patkowski, J.B.; Costa, T.R.D.; Schouten, S.; Levental, I.; Conticello, V.P.; Egelman, E.H.; Krupovica, M. (2023). Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery. Nature Comm. 14: 666. https://dx.doi.org/10.1038/s41467-023-36349-8
    Beyazay, T.; Belthle, K.S.; Farès, C.; Preiner, M.; Moran, J.; Martin, W.F.; Tüysüz, H. (2023). Ambient temperature CO2 fixation to pyruvate and subsequently to citramalate over iron and nickel nanoparticles. Nature Comm. 14: 570. https://dx.doi.org/10.1038/s41467-023-36088-w
    Born-Torrijos, A.; Riekenberg, P.M.; van der Meer, M.T.J.; Nachev, M.; Sures, B.; Thieltges, D.W. (2023). Parasite effects on host’s trophic and isotopic niches. Trends Parasitol. 39(9): 749-759. https://dx.doi.org/10.1016/j.pt.2023.06.003
    Bos, R.P.; Kaul, D.; Zettler, E.R.; Hoffman, J.M.; Dupont, C.L.; Amaral-Zettler, L.; Mincer, T.J. (2023). Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients. Environ. Microbiol. 25(12): 2761-2775. https://dx.doi.org/10.1111/1462-2920.16391
    Candy, A.S.; Taylor Parkins, S.K.; van Duyl, F.C.; Mueller, B.; Arts, M.G.I.; Barnes, W.; Carstensen, M.; Scholten, Y.; El-Khaled, Y.C.; Wild, C.; Wegley Kelly, L.; Nelson, C.E.; Sandin, S.A.; Vermeij, M.J.A.; Rohwer, F.; Picioreanu, C.; Stocchi, P.; Haas, A.F. (2023). Small-scale oxygen distribution patterns in a coral reef. Front. Mar. Sci. 10. https://dx.doi.org/10.3389/fmars.2023.1135686
    Chaouni, B.; Idrissi Azami, A.; Raoui, S.; Amzazi, S.; Nejjari, C.; Bakkali, F.; Zaid, E.H.; Hamamouch, N.; Amaral-Zettler, L.A.; Ghazal, H. (2023). Spatio-temporal patterns of Synechococcus oligotypes in Moroccan lagoonal environments. NPG Scientific Reports 13(1). https://dx.doi.org/10.1038/s41598-022-27263-y
    Cutmore, A.; Bale, N.; de Lange, G.J.; Nijenhuis, I. A.; Lourens, L.J. (2023). A Window Into Eastern Mediterranean Productivity Conditions Over Three Pliocene Precession‐Forced Climate Cycles. Paleoceanography and Paleoclimatology 38(4). https://dx.doi.org/10.1029/2022pa004550
    de Groot, T.; Mol, A.M.; Mesdag, K.I.; Ramond, P.; Ndhlovu, R.T.; Engelmann, J.C.; Röckmann, T.; Niemann, H. (2023). Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea. Biogeosciences 20(18): 3857-3872. https://dx.doi.org/10.5194/bg-20-3857-2023
    Debeljak, P.; Bayer, B.; Sun, Y.; Herndl, G.J.; Obernosterer, I. (2023). Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean. Microbiome 11(1): 187. https://dx.doi.org/10.1186/s40168-023-01600-3
    Delre, A.; Goudriaan, M.; Hernando-Morales, V.; Vaksmaa, A.; Ndhlovu, R.T.; Baas, M.; Keijzer, E.; de Groot, T.; Zeghal, E.; Egger, M.; Röckmann, T.; Niemann, H. (2023). Plastic photodegradation under simulated marine conditions. Mar. Pollut. Bull. 187: 114544. https://dx.doi.org/10.1016/j.marpolbul.2022.114544
    Donoghue, P.C.J.; Kay, C.; Spang, A.; Szöllosi, G.J.; Nenarokova, A.; Moody, E.R.R.; Pisani, D.; Williams, T.A. (2023). Defining eukaryotes to dissect eukaryogenesis. Curr. Biol. 33(17): R919-R929. https://dx.doi.org/10.1016/j.cub.2023.07.048
    Druce, E.; Grego, M.; Bolhuis, H.; Johnes, P.J.; Sánchez-Baracaldo, P. (2023). Draft Genome Sequences of Synechococcus sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: Five Freshwater Syn/Pro Clade Picocyanobacteria. Journal of Genomics 11: 26-36. https://dx.doi.org/10.7150/jgen.81013
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    Fry, B.; O’Mara, K.; Riekenberg, P.M.; Wassenaar, L.I.; Cormier, N. (2023). Flexitraits, natural chemical tracers of plant competition and productivity in Pacific mangroves. Wetlands 43(4). https://dx.doi.org/10.1007/s13157-023-01672-9
    Goudriaan, M.; Hernando-Morales, V.; van der Meer, M.T.J.; Mets, A.; Ndhlovu, R.; van Heerwaarden, J.; Simon, S.; Heuer, V.B.; Hinrichs, K.-U.; Niemann, H. (2023). A stable isotope assay with 13C-labeled polyethylene to investigate plastic mineralization mediated by Rhodococcus ruber. Mar. Pollut. Bull. 186: 114369. https://dx.doi.org/10.1016/j.marpolbul.2022.114369
    Hakimzadeh, A.; Abdala Asbun, A.; Albanese, D.; Bernard, M.; Buchner, D.; Callahan, B.; Caporaso, J. G.; Curd, E.; Djemiel, C.; Brandström Durling, M.; Elbrecht, V.; Gold, Z.; Gweon, H. S.; Hajibabaei, M.; Hildebrand, F.; Mikryukov, V.; Normandeau, E.; Özkurt, E.; M. Palmer, J.; Pascal, G.; Porter, T. M.; Straub, D.; Vasar, M.; Větrovský, T.; Zafeiropoulos, H.; Anslan, S. (2023). A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses. Mol. Ecol. Resour. Early View. https://dx.doi.org/10.1111/1755-0998.13847
    Hättig, K.; Varma, D.; Schouten, S.; van der Meer, M.T.J. (2023). Glacial–interglacial seawater isotope change near the Chilean Margin as reflected by δ2H values of C37 alkenones. Clim. Past 19(10): 1919-1930. https://dx.doi.org/10.5194/cp-19-1919-2023
    Hoshino, Y.; Villanueva, L. (2023). Four billion years of microbial terpenome evolution. FEMS Microbiol. Rev. 47(2): 1-39. https://dx.doi.org/10.1093/femsre/fuad008
    Liang, J.; Richter, N.; Xie, H.; Zhao, B.; Si, G.; Wang, J.; Hou, J.; Zhang, G.; Russell, J.M. (2023). Branched glycerol dialkyl glycerol tetraether (brGDGT) distributions influenced by bacterial community composition in various vegetation soils on the Tibetan Plateau. Palaeogeogr. Palaeoclimatol. Palaeoecol. 611: 111358. https://dx.doi.org/10.1016/j.palaeo.2022.111358
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    Manral, D.; Iovino, D.; Jaillon, O.; Masina, S.; Sarmento, H.; Iudicone, D.; Amaral-Zettler, L.; van Sebille, E. (2023). Computing marine plankton connectivity under thermal constraints. Front. Mar. Sci. 10: 1066050. https://dx.doi.org/10.3389/fmars.2023.1066050
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    Neubauer, C.; Kantnerová, K.; Lamothe, A.; Savarino, J.; Hilkert, A.; Juchelka, D.; Hinrichs, K.-U.; Elvert, M.; Heuer, V.B.; Elsner, M.; Bakkour, R.; Julien, M.; Öztoprak, M.; Schouten, S.; Hattori, S.; Dittmar, T. (2023). Discovering nature’s fingerprints: isotope ratio analysis on bioanalytical mass spectrometers. Journal of the American Society for Mass Spectrometry 34(4): 525-537. https://dx.doi.org/10.1021/jasms.2c00363
    Oortwijn, T.; de Monte, L.; Varley, D.P.; van der Meer, M.T.J.; van Gils, J.A. (2023). Tissue‐ and diet‐dependent stable carbon and nitrogen isotope discrimination: a calibration study in a captive shorebird species. J. Avian Biol. 2023(9-10): e03094. https://dx.doi.org/10.1111/jav.03094
    Ortmann, A.C.; Goodwin, K.D.; Bolhuis, H.; Groben, R.; Makhalanyane, T.P.; Bowman, J.; Robinson, S.; Thompson, F. (2023). Catalyzing progress in the blue economy through joint marine microbiome research across the Atlantic. Front. Mar. Sci. 10: 1327719. https://dx.doi.org/10.3389/fmars.2023.1327719
    Pérez Gallego, R.; Bale, N.J.; Sinninghe Damsté, J.S; Villanueva, L. (2023). Developing a genetic approach to target cyanobacterial producers of heterocyte glycolipids in the environment. Front. Microbiol. 14: 1257040. https://dx.doi.org/10.3389/fmicb.2023.1257040
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    Richter, N.; Hopmans, E.C.; Mitrovic, D.; Miguel Raposeiro, P.; Gonçalves, V.; Costa, A.C.; Amaral-Zettler, L.; Villanueva, L.; Rush, D. (2023). Distributions of bacteriohopanepolyols in lakes and coastal lagoons of the Azores Archipelago. Biogeosciences 20(11): 2065-2098. https://dx.doi.org/10.5194/bg-20-2065-2023
    Roitman, S.; Rozenberg, A.; Lavy, T.; Brussaard, C.P.D.; Kleifeld, O.; Béjà, O. (2023). Isolation and infection cycle of a polinton-like virus virophage in an abundant marine alga. Nature Microbiology 8(2): 332-346. https://dx.doi.org/10.1038/s41564-022-01305-7
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    Roohi, R.; Hoogenboom, R.; van Bommel, R.; Van der Meer, M.T.J.; Mienis, F.; Gollner, S. (2022). Influence of chemoautotrophic organic carbon on sediment and its infauna in the vicinity of the rainbow vent field. Front. Mar. Sci. 9: 732740. https://dx.doi.org/10.3389/fmars.2022.732740
    Rosselli, R.; López-Pérez, M.; Martin-Cuadrado, A.-B.; Rodríguez-Valera, F.; Bolhuis, H. (2022). Differences in gene expression patterns between cultured and natural Haloquadratum walsbyi ecotypes. Front. Microbiol. 13: 1044446. https://dx.doi.org/10.3389/fmicb.2022.1044446
    Sahonero Canavesi, D.X.; Siliakus, M.F.; Abdala Asbun, A.; Koenen, M.; von Meijenfeldt, F. A.B.; Boeren, S.; Bale, N.J.; Engelmann, J.C.; Fiege, K.; Strack van Schijndel, L.; Sinninghe Damsté, J.S.; Villanueva, L. (2022). Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in bacteria. Science Advances 8(50). https://dx.doi.org/10.1126/sciadv.abq8652
    Sahonero Canavesi, D.X.; Villanueva, L.; Bale, N.J.; Bosviel, J.; Koenen, M.; Hopmans, E.C.; Sinninghe Damsté, J.S. (2022). Changes in the distribution of membrane lipids during growth of Thermotoga maritima at different temperatures: Indications for the potential mechanism of biosynthesis of ether-bound diabolic acid (membrane-spanning) lipids. Appl. Environ. Microbiol. 88(2). https://dx.doi.org/10.1128/aem.01763-21
    Salazar Alekseyeva, K.; Herndl, G.J.; Baltar, F. (2022). Extracellular enzymatic activities of oceanic pelagic fungal strains and the influence of temperature. Journal of Fungi 8(6): 571. https://dx.doi.org/10.3390/jof8060571
    Sánchez-Andrea, I.; van der Graaf, C.M.; Hornung, B.; Bale, N.J.; Jarzembowska, M.; Sousa, D.Z.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Stams, A.J.M. (2022). Acetate degradation at low pH by the moderately acidophilic sulfate reducer Acididesulfobacillus acetoxydans gen. nov. sp. nov. Front. Microbiol. 13: 816605. https://dx.doi.org/10.3389/fmicb.2022.816605
    Santin, A.; Balzano, S.; Russo, M.T.; Esposito, F.P.; Ferrante, M.I.; Blasio, M.; Cavalletti, E.; Sardo, A. (2022). Microalgae-based PUFAs for food and feed: Current applications, future possibilities, and constraints. J. Mar. Sci. Eng. 10(7): 844. https://dx.doi.org/10.3390/jmse10070844
    Sert, M.F.; Niemann, H.; Reeves, E.P.; Granskog, M.A.; Hand, K.P.; Kekäläinen, T.; Jänis, J.; Rossel, P.E.; Ferré, B.; Silyakova, A.; Gründger, F. (2022). Compositions of dissolved organic matter in the ice-covered waters above the Aurora hydrothermal vent system, Gakkel Ridge, Arctic Ocean. Biogeosciences 19(8): 2101-2120. https://dx.doi.org/10.5194/bg-19-2101-2022
    Sinninghe Damsté, J.S.; Warden, L.A.; Berg, C.; Jürgens, K.; Moros, M. (2022). Evaluation of the distributions of hydroxylated glycerol dibiphytanyl glycerol tetraethers (GDGTs) in Holocene Baltic Sea sediments for reconstruction of sea surface temperature: the effect of changing salinity. Clim. Past 18(10): 2271-2288. https://dx.doi.org/10.5194/cp-18-2271-2022
    Sinninghe Damsté, J.S; Weber, Y.; Zopfi, J.; Lehmann, M.F.; Niemann, H. (2022). Distributions and sources of isoprenoidal GDGTs in Lake Lugano and other central European (peri-)alpine lakes: Lessons for their use as paleotemperature proxies. Quat. Sci. Rev. 277: 107352. https://dx.doi.org/10.1016/j.quascirev.2021.107352
    Sorokin, D.Y.; Elcheninov, A.G.; Khizhniak, T.V.; Koenen, M.; Bale, N.J.; Sinninghe Damsté, J.S.; Kublanov, I.V. (2022). Natronocalculus amylovorans gen. nov., sp. nov., and Natranaeroarchaeum aerophilus sp. nov., dominant culturable amylolytic natronoarchaea from hypersaline soda lakes in southwestern Siberia. Syst. Appl. Microbiol. 45(4): 126336. https://dx.doi.org/10.1016/j.syapm.2022.126336
    Sorokin, D.Y.; Yakimov, M.; Messina, E.; Merkel, A.Y.; Koenen, M.; Bale, N.J.; Sinninghe Damsté, J.S. (2022). Natranaeroarchaeum sulfidigenes gen. nov., sp. nov., carbohydrate-utilizing sulfur-respiring haloarchaeon from hypersaline soda lakes, a member of a new family Natronoarchaeaceae fam. nov. in the order Halobacteriales. Syst. Appl. Microbiol. 45(6): 126356. https://dx.doi.org/10.1016/j.syapm.2022.126356
    Spang, A. (2023). Is an archaeon the ancestor of eukaryotes? Environ. Microbiol. 25(4): 775-779. https://dx.doi.org/10.1111/1462-2920.16323
    Spang, A.; Mahendrarajah, T.A.; Offre, P.; Stairs, C.W. (2022). Evolving perspective on the origin and diversification of cellular life and the virosphere. Genome Biology and Evolution 14(6): evac034. https://dx.doi.org/10.1093/gbe/evac034
    Su, G.; Zopfi, J.; Niemann, H.; Lehmann, M.F. (2022). Multiple groups of methanotrophic bacteria mediate methane oxidation in anoxic lake sediments. Front. Microbiol. 13: 864630. https://dx.doi.org/10.3389/fmicb.2022.864630
    Suominen, S.; Gomez-Saez, G.V.; Dittmar, T.; Sinninghe Damsté, J.S; Villanueva, L. (2022). Interplay between microbial community composition and chemodiversity of dissolved organic matter throughout the Black Sea water column redox gradient. Limnol. Oceanogr. 67(2): 329-347. https://dx.doi.org/10.1002/lno.11995
    Vaksmaa, A.; Egger, M.; Lüke, C.; Martins, P.D.; Rosselli, R.; Abdala Asbun, A.; Niemann, H. (2022). Microbial communities on plastic particles in surface waters differ from subsurface waters of the North Pacific Subtropical Gyre. Mar. Pollut. Bull. 182: 113949. https://dx.doi.org/10.1016/j.marpolbul.2022.113949
    van der Weijst, C.M.H.; van der Laan, K.J.; Peterse, F.; Reichart, G.-J.; Sangiorgi, F.; Schouten, S.; Veenstra, T.J.T.; Sluijs, A. (2022). A 15-million-year surface- and subsurface-integrated TEX86 temperature record from the eastern equatorial Atlantic. Clim. Past 18(8): 1947-1962. https://dx.doi.org/10.5194/cp-18-1947-2022
    van Kemenade, Z.R.; Villanueva, L.; Hopmans, E.C.; Kraal, P.; Witte, H.J.; Sinninghe Damsté, J.S.; Rush, D. (2022). Bacteriohopanetetrol-x: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system. Biogeosciences 19(1): 201-221. https://dx.doi.org/10.5194/bg-19-201-2022
    Vasiliev, I.; van der Meer, M.T.J.; Stoica, M.; Krijgsman, W.; Reichart, G.-J.; Lazarev, S.; Butiseaca, G.A.; Niedermeyer, E.M.; Aliyeva, E.; van Baak, C.G.C.; Mulch, A. (2022). Biomarkers reveal two paramount Pliocene-Pleistocene connectivity events in the Caspian Sea Basin. Palaeogeogr. Palaeoclimatol. Palaeoecol. 587: 110802. https://dx.doi.org/10.1016/j.palaeo.2021.110802
    Villanueva, L.; Coolen, M.J.L. (2022). Contributions of genomics to lipid biomarker research: From paleoclimatology to evolution. Elements 18(2): 87-92. https://dx.doi.org/10.2138/gselements.18.2.87
    Wang, F.; Cvirkaite-Krupovic, V.; Vos, M.; Beltran, L.C.; Kreutzberger, M.A.B.; Winter, J.-M.; Su, Z.; Liu, J.; Schouten, S.; Krupovic, M.; Egelman, E.H. (2022). Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome. Cell 185(8): 1297-1307.e11. https://dx.doi.org/10.1016/j.cell.2022.02.019
    Wegley Kelly, L.; Nelson, C.E.; Petras, D.; Koester, I.; Quinlan, Z.A.; Arts, M.G.I.; Nothias, L.-F.; Comstock, J.; White, B.M.; Hopmans, E.C.; van Duyl, F.C.; Carlson, C.A.; Aluwihare, L.I.; Dorrestein, P.C.; Haas, A.F. (2022). Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals  . Proc. Natl. Acad. Sci. U.S.A. 119(5): e2110283119. https://dx.doi.org/10.1073/pnas.2110283119
    Weiss, G.M.; Lattaud, J.; van der Meer, M.T.J.; Eglinton, T.I. (2022). Co-evolution of the terrestrial and aquatic ecosystem in the Holocene Baltic Sea. Clim. Past 18(2): 233-248. https://dx.doi.org/10.5194/cp-18-233-2022
    Ye, Naihao; Han, Wentao; Toseland, Andrew; Wang, Yitao; Fan, Xiao; Xu, Dong; van Oosterhout, Cock; Aslam, Shazia N.; Barry, Kerrie; Beszteri, Bank; Brussaard, Corina; Clum, Alicia; Copeland, Alex; Daum, Chris; Duncan, Anthony; Eloe-Fadrosh, Emiley; Fong, Allison; Foster, Brian; Foster, Bryce; Ginzburg, Michael; Huntemann, Marcel; Ivanova, Natalia N.; Kyrpides, Nikos C.; Martin, Kara; Moulton, Vincent; Mukherjee, Supratim; Palaniappan, Krishnaveni; Reddy, T. B. K.; Roux, Simon; Schmidt, Katrin; Strauss, Jan; Timmermans, Klaas; Tringe, Susannah G.; Underwood, Graham J. C.; Valentin, Klaus U.; van de Poll, Willem H.; Varghese, Neha; Grigoriev, Igor V.; Tagliabue, Alessandro; Zhang, Jian; Zhang, Yan; Ma, Jian; Qiu, Huan; Li, Youxun; Zhang, Xiaowen; Mock, Thomas; Sea of Change Consortium (2022). The role of zinc in the adaptive evolution of polar phytoplankton. Nature Ecology & Evolution 6(7): 965-978. https://dx.doi.org/10.1038/s41559-022-01750-x
    Zhao, S.; Zettler, E.R.; Bos, R.P.; Lin, P.; Amaral-Zettler, L.; Mincer, T.J. (2022). Large quantities of small microplastics permeate the surface ocean to abyssal depths in the South Atlantic Gyre. Glob. Chang. Biol. 28(9): 2991-3006. https://dx.doi.org/10.1111/gcb.16089
  • 2021
    Achlatis, M.; van der Zande, R.M.; Webb, A.E.; de Bakker, D.M.; de Nooijer, L.J.; de Goeij, J.M. (2021). Photosynthetically stimulated bioerosion in symbiotic sponges: the role of glycerol and oxygen. Coral Reefs 40(3): 881-891. https://doi.org/10.1007/s00338-021-02091-0
    Ahn, A.-C.; Jongepier, E.; Schuurmans, J.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S; Galinski, E.A.; Roman, P.; Sorokin, D.Y.; Muyzer, G. (2021). Molecular and physiological adaptations to low temperature in Thioalkalivibrio strains isolated from soda lakes with different temperature regimes. mSystems 6(2): e01202-20. https://dx.doi.org/10.1128/msystems.01202-20
    Amaral-Zettler, L.A. (2021). Latitudinal Diversity Gradients (LDGs) and macroalgal microbiomes: A chimera of biotic and abiotic effects? J. Phycol. 57(6): 1679-1680. https://dx.doi.org/10.1111/jpy.13208
    Amaral-Zettler, L.A.; Ballerini, T.; Zettler, E.R.; Abdala Asbun, A.; Adame, A.; Casotti, R.; Dumontet, B.; Donnarumma, V.; Engelmann, J.C.; Frère, L.; Mansui, J.; Philippon, M.; Pietrelli, L.; Sighicelli, M. (2021). Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere. Environ. Pollut. 286: 117439. https://dx.doi.org/10.1016/j.envpol.2021.117439
    Amaral-Zettler, L.A.; Zettler, E.R.; Mincer, T.J. ; Klaassen, M.A.; Gallager, S.M. (2021). Biofouling impacts on polyethylene density and sinking in coastal waters: A macro/micro tipping point? Wat. Res. 201: 117289. https://doi.org/10.1016/j.watres.2021.117289
    Bale, N.J.; Ding, S.; Hopmans, E.C.; Arts, M.G.I.; Villanueva, L.; Boschman, C.; Haas, A.F.; Schouten, S.; Sinninghe Damsté, J.S (2021). Lipidomics of environmental microbial communities. I: visualization of component distributions using untargeted analysis of high-resolution mass spectrometry data. Front. Microbiol. 12. https://dx.doi.org/10.3389/fmicb.2021.659302
    Baltar, F.; Alvarez-Salgado, X.A.; Aristegui, J.; Benner, R.; Hansell, D.A.; Herndl, G.J.; Lønborg, C. (2021). What is refractory organic matter in the ocean? Front. Mar. Sci. 8: 642637. https://doi.org/10.3389/fmars.2021.642637
    Baltar, F.; Zhao, Z.; Herndl, G.J. (2021). Potential and expression of carbohydrate utilization by marine fungi in the global ocean. Microbiome 9: 106. https://doi.org/10.1186/s40168-021-01063-4
    Balzano, S.; Jamieson, T.; Leterme, S. (2021). Changes in microbial communities during seawater pre-treatment within a desalination plant. Aquat. Microb. Ecol. 86: 63-68. https://doi.org/10.3354/ame01958
    Baquero, D.P.; Gazi, A.D.; Sachse, M.; Liu, J.; Schmitt, C.; Moya-Nilges, M.; Schouten, S.; Prangishvili, D.; Krupovic, M. (2021). A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals. Proc. Natl. Acad. Sci. U.S.A. 118(32): e2105540118. https://dx.doi.org/10.1073/pnas.2105540118
    Baxter, A.J.; Peterse, F.; Verschuren, D.; Sinninghe Damsté, J.S. (2021). Anoxic in situ production of bacterial GMGTs in the water column and surficial bottom sediments of a meromictic tropical crater lake: Implications for lake paleothermometry. Geochim. Cosmochim. Acta 306: 171-188. https://dx.doi.org/10.1016/j.gca.2021.05.015
    Baxter, A.J.; van Bree, L.G.J.; Peterse, F.; Hopmans, E.C.; Villanueva, L.; Verschuren, D.; Sinninghe Damste, J.S. (2021). Seasonal and multi-annual variation in the abundance of isoprenoid GDGT membrane lipids and their producers in the water column of a meromictic equatorial crater lake (Lake Chala, East Africa). Quat. Sci. Rev. 273: 107263. https://dx.doi.org/10.1016/j.quascirev.2021.107263
    Biggs, T.E.G.; Huisman, J.; Brussaard, C.P.D. (2021). Viral lysis modifies seasonal phytoplankton dynamics and carbon flow in the Southern Ocean. ISME J. 15: 3615-3622. https://dx.doi.org/10.1038/s41396-021-01033-6
    Blanchet, C.L.; Tjallingii, R.; Schleicher, A.M.; Schouten, S.; Frank, M.; Brauer, A. (2021). Deoxygenation dynamics on the western Nile deep-sea fan during sapropel S1 from seasonal to millennial timescales. Clim. Past 17(3): 1025-1050. https://doi.org/10.5194/cp-17-1025-2021
    Blasio, M.; Balzano, S. (2021). Fatty acids derivatives From eukaryotic microalgae, pathways and potential applications. Front. Microbiol. 12: 718933. https://dx.doi.org/10.3389/fmicb.2021.718933
    Boden, J.S.; Grego, M.; Bolhuis, H.; Sánchez-Baracaldo, P. (2021). Draft genome sequences of three filamentous cyanobacteria isolated from brackish habitats. Journal of Genomics 9: 20-25. https://doi.org/10.7150/jgen.53678
    Braun, A.; Spona-Friedl, M.; Avramov, M.; Elsner, M.; Baltar, F.; Reinthaler, T.; Herndl, G.J.; Griebler, C. (2021). Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling. Biogeosciences 18(12): 3689-3700. https://dx.doi.org/10.5194/bg-18-3689-2021
    Butiseaca, G.A.; Vasiliev, I.; Van der Meer, M.T.J.; Krijgsman, W.; Palcu, D.V.; Feurdean, A.; Niedermeyer, E.M.; Mulch, A. (2021). Severe late Miocene droughts affected western Eurasia. Global Planet. Change 206: 103644. https://dx.doi.org/10.1016/j.gloplacha.2021.103644
    Çagatay, M.N.; Eris, K.; Erdem, Z. (2021). Morphology and late Pleistocene-Holocene sedimentation of the Strait of İstanbul (Bosphorus): A review. Geol. Soc. Lond. Spec. publ. 523: SP523-2021-48. https://dx.doi.org/10.1144/sp523-2021-48
    Campana, S.; Hudspith, M.; Lankes, D.; de Kluijver, A.; Demey, C.; Schoorl, J.; Absalah, S.; van der Meer, M.T.J.; Mueller, B.; de Goeij, J.M. (2021). Processing of naturally sourced macroalgal- and coral-dissolved organic matter (DOM) by high and low microbial abundance encrusting sponges. Front. Mar. Sci. 8: 640583. https://doi.org/10.3389/fmars.2021.640583
    Coleman, G.A.; Davín, A.A.; Mahendrarajah, T.A.; Szánthó, L.L.; Spang, A.; Hugenholtz, P.; Szöllosi, G.J.; Williams, T.A. (2021). A rooted phylogeny resolves early bacterial evolution. Science (Wash.) 372(6542): eabe0511. https://doi.org/10.1126/science.abe0511
    De Anda, V.; Chen, L.-X.; Dombrowski, N.; Hua, Z.-S.; Jiang, H.-C.; Banfield, J.F.; Li, W.-J.; Baker, B.J. (2021). Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Comm. 12. https://doi.org/10.1038/s41467-021-22736-6
    De Anda, V.; Chen, L.-X.; Dombrowski, N.; Hua, Z.-S.; Jiang, H.-C.; Banfield, J.F.; Li, W.-J.; Baker, B.J. (2021). Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Comm. 12(1). https://doi.org/10.1038/s41467-021-22736-6
    De Corte, D.; Muck, S.; Tiroch, J.; Mena, C.; Herndl, G.J.; Sintes, E. (2021). Microbes mediating the sulfur cycle in the Atlantic Ocean and their link to chemolithoautotrophy. Environ. Microbiol. 23(11): 7152-7167. https://dx.doi.org/10.1111/1462-2920.15759
    de L. Sobrinho, R.; Bernardes, M.C.; de Rezende, C.E.; Kim, J.-H; Schouten, S.; Sinninghe Damsté, J.S (2021). A multiproxy approach to characterize the sedimentation of organic carbon in the Amazon continental shelf. Mar. Chem. 232: 103961. https://doi.org/10.1016/j.marchem.2021.103961
    de Vogel, F.A.; Schlundt, C.; Stote, R.E.; Ratto, J.A.; Amaral-Zettler, L.A. (2021). Comparative genomics of marine bacteria from a historically defined plastic biodegradation consortium with the capacity to biodegrade polyhydroxyalkanoates. Microorganisms 9: 186. https://dx.doi.org/10.3390/microorganisms9010186
    Dearing Crampton-Flood, E.; van der Weijst, C.M.H.; van der Molen, G.; Bouquet, M.; Yedema, Y.; Donders, T.H.; Sangiorgi, F.; Sluijs, A.; Sinninghe Damsté, J.S; Peterse, F (2021). Identifying marine and freshwater overprints on soil-derived branched GDGT temperature signals in Pliocene Mississippi and Amazon River fan sediments. Org. Geochem. 154: 104200. https://doi.org/10.1016/j.orggeochem.2021.104200
    Ding, S.; Bale, N.J.; Hopmans, E.C.; Villanueva, L.; Arts, M.G.I.; Schouten, S.; Sinninghe Damsté, J.S (2021). Lipidomics of environmental microbial communities. II: characterization using molecular networking and information theory. Front. Microbiol. 12: 659315. https://dx.doi.org/10.3389/fmicb.2021.659315
    Dombrowski, N.; Mahendrarajah, T.A.; Gross, S.T.; Eme, L.; Spang, A. (2021). Archaea, in: Green, L.H. et al. Practical Handbook of Microbiology, 4th edition. pp. 229-248. https://doi.org/10.1201/9781003099277-23
    Eich, C.; Pont, S.B.E.H.; Brussaard, C.P.D. (2021). Effects of UV radiation on the chlorophyte Micromonas polaris host–virus interactions and MpoV-45T virus infectivity. Microorganisms 9(12): 2429. https://dx.doi.org/10.3390/microorganisms9122429
    Erdem, Z.; Lattaud, J.; van Erk, M.R.; Mezger, E.M.; Reichart, G.-J.; Lückge, A.; Sinninghe Damste, J.S.; Schouten, S. (2021). Applicability of the long chain diol index (LDI) as a sea surface temperature proxy in the Arabian Sea. Paleoceanography and Paleoclimatology 36(12): e2021PA004255. https://dx.doi.org/10.1029/2021pa004255
    Evans, C.; Brandsma, J.; Meredith, M.P.; Thomas, D.N.; Venables, H.J.; Pond, D.W.; Brussaard, C.P.D. (2021). Shift from carbon flow through the microbial loop to the viral shunt in coastal Antarctic Waters during Austral Summer. Microorganisms 9(2): 460. https://doi.org/10.3390/microorganisms9020460
    Fischer, P.Q.; Sánchez-Andrea, I.; Stams, A.J.M.; Villanueva, L.; Sousa, D.Z. (2021). Anaerobic microbial methanol conversion in marine sediments. Environ. Microbiol. 23(3): 1348-1362. https://doi.org/10.1111/1462-2920.15434
    Fletcher, T.; Eble, C.; Sinninghe Damsté, J.S.; Brown, K.J.; Rybczynski, N.; Gosse, J.; Liu, Z.; Ballantyne, A. (2021). Widespread wildfire across the Pliocene Canadian Arctic Archipelago. Palaeogeogr. Palaeoclimatol. Palaeoecol. 584: 110653. https://dx.doi.org/10.1016/j.palaeo.2021.110653
    Foekema, E.; van der Molen, J.; Asjes, A.; Bijleveld, A.; Brasseur, S.; Camphuysen, K. (C.J.); Van Franeker, J.A.; Holthuijsen, S.; Kentie, R.; Kühn, S.; Leopold, M.; Kleine Schaars, L.; Lok, T.; Niemann, H.; Schop, J. (2021). Ecologische effecten van het incident met de MSC Zoe op het Nederlandse Waddengebied, met focus op microplastics. NIOZ-rapport, 2021(03). NIOZ Royal Netherlands Institute for Sea Research: Texel. 98 pp. https://doi.org/10.25850/nioz/7b.b.mb
    George, E.; Mullinix, J.A.; Meng, F.; Bailey, B.A.; Edwards, C.; Felts, B.; Haas, A.F.; Hartmann, A.C.; Mueller, B.; Roach, T.N.F.; Salamon, P.; Silveira, C.B.; Vermeij, M.J.A.; Rohwer, F.; Luque, A. (2021). Space-filling and benthic competition on coral reefs. PeerJ 9: e11213. https://dx.doi.org/10.7717/peerj.11213
    Glatzel, T.; Herndl, G. (2021). Recognizing the complexity of soil organic carbon dynamics in vegetated coastal habitats. Glob. Chang. Biol. 27(1): 3-4. https://doi.org/10.1111/gcb.15426
    Gründger, F.; Probandt, D.; Knittel, K.; Carrier, V.; Kalenitchenko, D.; Silyakova, A.; Serov, P.; Ferré, B.; Svenning, M.M.; Niemann, H. (2021). Seasonal shifts of microbial methane oxidation in Arctic shelf waters above gas seeps. Limnol. Oceanogr. 66(5): 1896-1914. https://doi.org/10.1002/lno.11731
    Guerrero-Cruz, S.; Vaksmaa, A.; Horn, M.A.; Niemann, H.; Pijuan, M.; Ho, A. (2021). Methanotrophs: discoveries, environmental relevance, and a perspective on current and future applications. Front. Microbiol. 12: 678057. https://dx.doi.org/10.3389/fmicb.2021.678057
    Häggi, C.; Hopmans, E.C.; Schefuß, E.; Sawakuchi, A.O.; Schreuder, L.T.; Bertassoli, D.J.; Chiessi, C.M.; Mulitza, S.; Sawakuchi, H.O.; Baker, P.A.; Schouten, S. (2021). Negligible quantities of particulate low‐temperature pyrogenic carbon reach the Atlantic Ocean via the Amazon River. Global Biogeochem. Cycles 35(9): e2021GB006990. https://dx.doi.org/10.1029/2021gb006990
    Holzheimer, M.; Sinninghe Damste, J.S.; Schouten, S.; Havenith, R.W.A.; Minnaard, A.J. (2021). Total synthesis of the alleged structure of crenarchaeol enables structure revision. Angew. Chem. 133(32): 17645-17654. https://doi.org/10.1002/ange.202105384
    Hopmans, E.C.; Smit, N.T.; Schwartz-Narbonne, R.; Sinninghe Damsté, J.S.; Rush, D. (2021). Analysis of non-derivatized bacteriohopanepolyols using UHPLC-HRMS reveals great structural diversity in environmental lipid assemblages. Org. Geochem. 160: 104285. https://dx.doi.org/10.1016/j.orggeochem.2021.104285
    Hörnlein, C.; Bolhuis, H. (2021). Daily rhythmicity in coastal microbial mats, in: Johnson, C.H. et al. Circadian rhythms in bacteria and microbiomes. . https://dx.doi.org/10.1007/978-3-030-72158-9_19
    Jacques, C.; Sapart, C.J.; Fripiat, F.; Carnat, G.; Zhou, J.; Delille, B.; Röckmann, T.; van der Veen, C.; Niemann, H.; Haskell, T.; Tison, J.-L. (2021). Sources and sinks of methane in sea ice: insights from stable isotopes. Elem. Sci. Anth. 9(1): 00167. https://dx.doi.org/10.1525/elementa.2020.00167
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  • 2020
    Abdala Asbun, A.; Besseling, M.A.; Balzano, S.; van Bleijswijk, J.D.L.; Witte, H.J.; Villanueva, L.; Engelmann, J.C. (2020). Cascabel: A scalable and versatile amplicon sequence data analysis pipeline delivering reproducible and documented results. Frontiers in Genetics 11: 489357. https://doi.org/10.3389/fgene.2020.489357
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    Arnold, J.; Engelmann, J.C.; Schneider, N.; Bosserhoff, A.K.; Kuphal, S. (2020). miR-488-5p and its role in melanoma. Experimental and Molecular Pathology 112: 104348. https://dx.doi.org/10.1016/j.yexmp.2019.104348
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    Saidi-Mehrabad, A.; Kits, D.K.; Kim, J.-J.; Tamas, I.; Schumann, P.; Khadka, R.; Strilets, T.; Smirnova, A.V.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S; Dunfield, P.F. (2020). Methylicorpusculum oleiharenae gen. nov., sp. nov., an aerobic methanotroph isolated from an oil sands tailings pond. Int. J. Syst. Evol. Microbiol. 70(4): 2499-2508. https://doi.org/10.1099/ijsem.0.004064
    Sánchez Barranco, V.; van der Meer, M.T.J.; Kagami, M.; Van den Wyngaert, S.; Van de Waal, D.B.; Van Donk, E.; Gsell, A.S. (2020). Trophic position, elemental ratios and nitrogen transfer in a planktonic host–parasite–consumer food chain including a fungal parasite. Oecologia 194: 541-554. https://doi.org/10.1007/s00442-020-04721-w
    Scasso, R.A.; Prámparo, M.B.; Vellekoop, J.; Franzosi, C.; Castro, L.N.; Sinninghe Damsté, J.S (2020). A high-resolution record of environmental changes from a Cretaceous-Paleogene section of Seymour Island, Antarctica. Palaeogeogr. Palaeoclimatol. Palaeoecol. 555: 109844. https://dx.doi.org/10.1016/j.palaeo.2020.109844
    Schlundt, C.; Mark Welch, J.L.; Knochel, A.M.; Zettler, E.R.; Amaral-Zettler, L.A. (2020). Spatial structure in the “Plastisphere”: Molecular resources for imaging microscopic communities on plastic marine debris. Mol. Ecol. Resour. 20(3): 620-634. https://dx.doi.org/10.1111/1755-0998.13119
    Schroeter, N.; Lauterbach, S.; Stebich, M.; Kalanke, J.; Mingram, J.; Yildiz, C.; Schouten, S.; Gleixner, G. (2020). Biomolecular evidence of early human occupation of a high-altitude site in Western Central Asia during the Holocene. Front. Earth Sci. 8: article 20. https://dx.doi.org/10.3389/feart.2020.00020
    Schroeter, N.; Toney, J.L.; Lauterbach, S.; Kalanke, J.; Schwarz, A.; Schouten, S.; Gleixner, G. (2020). How to deal with multi-proxy data for paleoenvironmental reconstructions: Applications to a Holocene lake sediment record from the Tian Shan, Central Asia. Front. Earth Sci. 8: article 353. https://dx.doi.org/10.3389/feart.2020.00353
    Schwartz-Narbonne, R.; Schaeffer, P.; Hopmans, E.C.; Schenesse, M.; Alex Charlton, E.; Martin Jones, D.; Sinninghe Damsté, J.S.; Farhan Ul Haque, M.; Jetten, M.S.M.; Lengger, S.K. (2020). A unique bacteriohopanetetrol stereoisomer of marine anammox. Org. Geochem. 143: 103994. https://doi.org/10.1016/j.orggeochem.2020.103994
    Sert, M.F.; D’Andrilli, J.; Gründger, F.; Niemann, H.; Granskog, M.A.; Pavlov, A.K.; Ferré, B.; Silyakova, A. (2020). Compositional differences in dissolved organic matter between Arctic cold seeps versus non-seep sites at the Svalbard Continental Margin and the Barents Sea. Front. Earth Sci. 8: 552731. https://doi.org/10.3389/feart.2020.552731
    Sharifan, H. (2020). Mechanistic insight on transfer rate of the polar organic compounds through the polyethersulfone membrane. Environ. Monit. Assess. 192(6): Article number: 344. https://dx.doi.org/10.1007/s10661-020-08309-y
    Silyakova, A.; Jansson, P.G.; Serov, P.; Ferré, B.; Pavlov, A.K.; Hattermann, T.; Graves, C.A.; Platt, S.M.; Myhre, C.L.; Gründger, F.; Niemann, H. (2020). Physical controls of dynamics of methane venting from a shallow seep area west of Svalbard. Cont. Shelf Res. 194: 104030. https://dx.doi.org/10.1016/j.csr.2019.104030
    Simon, M.H.; Ziegler, M.; Barker, S.; van der Meer, M.T.J.; Schouten, S.; Hall, I.R. (2020). A late Pleistocene dataset of Agulhas Current variability. Scientific Data 7: 385. https://doi.org/10.1038/s41597-020-00689-7
    Sluijs, A.; Frieling, J.; Inglis, G.N.; Nierop, K.G.J.; Peterse, F; Sangiorgi, F.; Schouten, S. (2020). Late Paleocene–early Eocene Arctic Ocean sea surface temperatures: reassessing biomarker paleothermometry at Lomonosov Ridge. Clim. Past 16(6): 2381-2400. https://doi.org/10.5194/cp-16-2381-2020
    Stairs, C.W.; Sharamshi, J.E.; Tamarit, D.; Eme, L.; Jorgensen, S.L.; Spang, A.; Ettema, T.J.G. (2020). Chlamydial contribution to anaerobic metabolism during eukaryotic evolution. Science Advances 6(35): eabb7258. https://dx.doi.org/10.1126/sciadv.abb7258
    Steen, A.D.; Kusch, S.; Abdulla, H.A.; Cakic, N.; Coffinet, S.; Dittmar, T.; Fulton, J.M.; Galy, V.; Hinrichs, K.-U.; Ingalls, A.E.; Koch, B.P.; Kujawinski, E.B.; Liu, Z.; Osterholz, H.; Rush, D.; Seidel, M.; Sepúlveda, J.; Wakeham, S.G. (2020). Analytical and Computational Advances, Opportunities, and Challenges in Marine Organic Biogeochemistry in an Era of “Omics”. Front. Mar. Sci. 7: article 718. https://dx.doi.org/10.3389/fmars.2020.00718
    Steiner, P.A.; Geijo, J.; Fadeev, E.; Obiol, A.; Sintes, E.; Rattei, T.; Herndl, G.J. (2020). Functional seasonality of free-living and particle-associated prokaryotic communities in the coastal Adriatic Sea. Front. Microbiol. 11: 584222. https://doi.org/10.3389/fmicb.2020.584222
    Su, G.; Zopfi, J.; Yao, H.; Steinle, L.; Niemann, H.; Lehmann, M.F. (2020). Manganese/iron‐supported sulfate‐dependent anaerobic oxidation of methane by archaea in lake sediments. Limnol. Oceanogr. 65(4): 863-875. https://dx.doi.org/10.1002/lno.11354
    Suominen, S. (2020). The role of microorganisms in the cycling of organic matter in anoxic marine environments. A culture-independent approach. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-643-8. https://doi.org/10.33540/117
    Theroux, S.; Huang, Y.; Toney, J.L.; Andersen, R.; Nyren, P.; Bohn, R.; Salacup, J.; Murphy, L.; Amaral-Zettler, L. (2020). Successional blooms of alkenone‐producing haptophytes in Lake George, North Dakota: Implications for continental paleoclimate reconstructions. Limnol. Oceanogr. 65(2): 413-425. https://dx.doi.org/10.1002/lno.11311
    Thomson, B.; Wenley, J.; Lockwood, S.; Twigg, I.; Currie, K.; Herndl, G.J.; Hepburn, C.D.; Baltar, F. (2020). Relative importance of phosphodiesterase vs. phosphomonoesterase (alkaline phosphatase) activities for dissolved organic phosphorus hydrolysis in epi- and mesopelagic waters. Front. Earth Sci. 8: 560893. https://doi.org/10.3389/feart.2020.560893
    Tinta, T.; Zhao, Z.; Escobar, A.; Klun, K.; Bayer, B.; Amano, C.; Bamonti, L.; Herndl, G.J. (2020). Microbial processing of jellyfish detritus in the ocean. Front. Microbiol. 11: 590995. https://doi.org/10.3389/fmicb.2020.590995
    Treude, T.; Krause, S.; Steinle; Burwicz; Hamdan, L. J.; Niemann, H.; Feseker, T.; Liebetrau, V.; Krastel, S.; Berndt, C. (2020). Biogeochemical consequences of nonvertical methane transport in sediment offshore northwestern Svalbard. JGR: Biogeosciences 125(3). https://dx.doi.org/10.1029/2019jg005371
    van Bleijswijk, J.D.L.; Engelmann, J.C.; Klunder, L.; Witte, H.J.; Witte, J.IJ.; van der Veer, H.W. (2020). Analysis of a coastal North Sea fish community: Comparison of aquatic environmental DNA concentrations to fish catches. Environmental DNA 2(4): 429-445. https://dx.doi.org/10.1002/edn3.67
    van Bree, L.G.J.; Peterse, F.; Baxter, A.J.; De Crop, W.; van Grinsven, S.; Villanueva, L.; Verschuren, D.; Sinninghe Damsté, J.S (2020). Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake. Biogeosciences 17(21): 5443-5463. https://doi.org/10.5194/bg-17-5443-2020
    van der Graaf, C.M.; Sánchez-España, J.; Yusta, I.; Ilin, A.; Shetty, S.A.; Bale, N.J.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2020). Biosulfidogenesis mediates natural attenuation in acidic mine pit lakes. Microorganisms 8(9): 1275. https://doi.org/10.3390/microorganisms8091275
    van der Graaf; Sánchez-España; Yusta; Ilin; Shetty; Bale, N.J.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2020). Biosulfidogenesis mediates natural attenuation in acidic mine pit lakes. Microorganisms 8(9): 1275. https://doi.org/10.3390/microorganisms8091275
    van Duyl, F.C.; Lengger, S.K.; Schouten, S.; Lundälv, T.; van Oevelen, D.; Müller, C.E. (2020). Dark CO2 fixation into phospholipid-derived fatty acids by the cold-water coral associated sponge Hymedesmia (Stylopus) coriacea (Tisler Reef, NE Skagerrak). Mar. Biol. Res. 16(1): 1-17. https://dx.doi.org/10.1080/17451000.2019.1704019
    van Duyl, F.C.; Meesters, E.H. (2020). Cruise report RV Pelagia 64PE465 : Sinkhole expedition, 5 December - 18 December 2019 Guadeloupe-Guadeloupe. NIOZ Royal Institute for Sea Research: Texel. 79 pp.
    van Grinsven, S. (2020). Microorganisms and electron acceptors affecting methane oxidation in freshwater and marine systems. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6332-631-5. 182 pp. https://doi.org/10.33540/33
    van Grinsven, S.; Sinninghe Damsté, J.S.; Harrison, J.; Polerecky, L.; Villanueva, L. (2021). Nitrate promotes the transfer of methane‐derived carbon from the methanotroph Methylobacter sp. to the methylotroph Methylotenera sp. in eutrophic lake water. Limnol. Oceanogr. 66(3): 878-891. https://doi.org/10.1002/lno.11648
    van Grinsven, S.; Sinninghe Damsté, J.S; Abdala Asbun, A.; Engelmann, J.C.; Harrison, J.; Villanueva, L. (2020). Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. Environ. Microbiol. 22(2): 766-782. https://dx.doi.org/10.1111/1462-2920.14886
    van Grinsven, S.; Sinninghe Damsté, J.S; Harrison, J.; Villanueva, L. (2020). Impact of electron acceptor availability on methane-influenced microorganisms in an enrichment culture obtained from a stratified lake. Front. Microbiol. 11: article 715. https://dx.doi.org/10.3389/fmicb.2020.00715
    van Grinsven, S.; Sinninghe Damsté, J.S; Villanueva, L. (2020). Assessing the effect of humic substances and Fe(III) as potential electron acceptors for anaerobic methane oxidation in a marine anoxic system. Microorganisms 8(9): 1288. https://doi.org/10.3390/microorganisms8091288
    van Vliet, D.M.; Lin; Bale, N.J.; Koenen, M.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2020). Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., two marine anaerobes of the Pontiellaceae fam. nov. producing sulfated glycosaminoglycan-like exopolymers. Microorganisms 8(6): 920. https://dx.doi.org/10.3390/microorganisms8060920
    van Walraven, L.; van Bleijswijk, J.; van der Veer, H.W. (2020). Here are the polyps: in situ observations of jellyfish polyps and podocysts on bivalve shells. PeerJ 8: e9260. https://dx.doi.org/10.7717/peerj.9260
    van Winden, J.F.; Talbot, H.M.; Reichart, G.-J.; McNamara, N.P.; Benthien, A.; Sinninghe Damsté, J.S. (2020). Influence of temperature on the δ13C values and distribution of methanotroph‐related hopanoids in Sphagnum‐dominated peat bogs. Geobiol. 18(4): 497-507. https://dx.doi.org/10.1111/gbi.12389
    Weinbauer, M.; Griebler, C.; van Aken, H.M.; Herndl, G. (2020). Viral infection of prokaryotic plankton during early formation of the North Atlantic Deep Water. Aquat. Microb. Ecol. 84: 175-189. https://dx.doi.org/10.3354/ame01934
    Weiss, G.M.; Massalska, B.; Hennekam, R.; Reichart, G.-J.; Sinninghe Damsté, J.S; Schouten, S.; van der Meer, M.T.J. (2020). Alkenone distributions and hydrogen isotope ratios show changes in haptophyte species and source water in the Holocene Baltic Sea. Geochem. Geophys. Geosyst. 21(2): e2019GC008751. https://dx.doi.org/10.1029/2019gc008751
    Welsh, J.E.; Steenhuis, P.; de Moraes, K.R.; van der Meer, J.; Thieltges, D.W.; Brussaard, C.P.D. (2020). Marine virus predation by non-host organisms. NPG Scientific Reports 10(1): 9 pp. https://dx.doi.org/10.1038/s41598-020-61691-y
    Witkowski, C.R. (2020). Reconstructing past atmospheric CO2 levels from the stable carbon isotopic composition of general algal biomarkers. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6380-644-2. https://hdl.handle.net/1874/389900
    Witkowski, C.R.; van der Meer, M.T.J.; Blais, B.; Sinninghe Damsté, J.S.; Schouten, S. (2020). Algal biomarkers as a proxy for pCO2: Constraints from late quaternary sapropels in the eastern Mediterranean. Org. Geochem. 150: 104123. https://doi.org/10.1016/j.orggeochem.2020.104123
    Witkowski, C.R.; van der Meer, M.T.J.; Smit, N.T.; Sinninghe Damsté, J.S.; Schouten, S. (2020). Testing algal-based pCO2 proxies at a modern CO2 seep (Vulcano, Italy). NPG Scientific Reports 10(1): 10508. https://dx.doi.org/10.1038/s41598-020-67483-8
    Yadav, S.; Villanueva, L.; Bale, N.; Koenen, M.; Hopmans, E.C.; Sinninghe Damsté, J.S (2020). Physiological, chemotaxonomic and genomic characterization of two novel piezotolerant bacteria of the family Marinifilaceae isolated from sulfidic waters of the Black Sea. Syst. Appl. Microbiol. 43(5): 126122. https://doi.org/10.1016/j.syapm.2020.126122
    Yao, H.; Niemann, H.; Panieri, G. (2020). Multi-proxy approach to unravel methane emission history of an Arctic cold seep. Quat. Sci. Rev. 244: 106490. https://doi.org/10.1016/j.quascirev.2020.106490
    Zabelskii, D.; Alekseev, A.; Kovalev, K.; Rankovic, V.; Balandin, T.; Soloviov, D.; Bratanov, D.; Savelyeva, E.; Podolyak, E.; Volkov, D.; Vaganova, S.; Astashkin, R.; Chizhov, I.; Yutin, N.; Rulev, M.; Popov, A.; Eria-Oliveira, A.S.; Rokitskaya, T.; Mager, T.; Antonenko, Y.; Rosselli, R.; Armeev, G.; Shaitan, K.; Vivaudou, M.; Büldt, G.; Rogachev, A.; Rodriguez-Valera, F.; Kirpichnikov, M.; Moser, T.; Offenhäusser, A.; Willbold, D.; Koonin, E.; Bamberg, E.; Gordeliy, V. (2020). Viral rhodopsins 1 are an unique family of light-gated cation channels. Nature Comm. 11(1): 5705. https://doi.org/10.1038/s41467-020-19457-7
    Zettler, E.R.; Amaral-Zettler, L.A. (2020). The (Un)Natural History of the “Plastisphere,” A New Marine Ecosystem, in: Streit-Bianchi, M. et al. Mare Plasticum - The Plastic Sea. pp. 73-88. https://doi.org/10.1007/978-3-030-38945-1_4
    Zhang, Y.; Qin, W.; Hou, L.; Zakem, E.J.; Wan, X.; Zhao, Z.; Liu, L.; Hunt, K.A.; Jiao, N.; Kao, S.-J.; Tang, K.; Xie, X.; Shen, J.; Li, Y.; Chen, M.; Dai, X.; Liu, C.; Deng, W.; Dai, M.; Ingalls, A.E.; Stahl, D.A.; Herndl, G.J. (2020). Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean. Proc. Natl. Acad. Sci. U.S.A. 117(9): 4823-4830. https://dx.doi.org/10.1073/pnas.1912367117
    Zhao, Z.; Baltar, F.; Herndl, G. (2020). Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes. Science Advances 6(16): eaaz4354. https://dx.doi.org/10.1126/sciadv.aaz4354
    Zindorf, M.; Rush, D.; Jaeger, J.; Mix, A.C.; Penkrot, M.L.; Schnetger, B.; Sidgwick, F.R.; Talbot, H.M.; van der Land, C.; Wagner, T.; Walczak, M.H.; März, C. (2020). Reconstructing oxygen deficiency in the glacial Gulf of Alaska: Combining biomarkers and trace metals as paleo-redox proxies. Chem. Geol. 558: 119864. https://dx.doi.org/10.1016/j.chemgeo.2020.119864
  • 2019
    Åström, E.K.L.; Carroll, M.; Sen, A.; Niemann, H.; Ambrose, W.G.; Lehmann, M.F.; Carroll, J. (2019). Chemosynthesis influences food web and community structure in high-Arctic benthos. Mar. Ecol. Prog. Ser. 629: 19-42. https://dx.doi.org/10.3354/meps13101
    Bäckström, D.; Yutin, N.; Jorgensen, S.L.; Dharamshi, J.; Homa, F.; Zaremba-Niedwiedzka, K.; Spang, A.; Wolf, Y.I.; Koonin, E.V.; Ettema, T.J.G. (2019). Virus genomes from deep sea sediments expand the ocean megavirome and support independent origins of viral gigantism. Mbio 10(2): e02497-18. https://dx.doi.org/10.1128/mbio.02497-18
    Bale, N.J.; Hennekam, R.; Hopmans, E.C.; Dorhout, D.; Reichart, G.-J.; Van der Meer, M.T.J.; Villareal, T.A.; Sinninghe Damsté, J.S; Schouten, S. (2019). Biomarker evidence for nitrogen-fixing cyanobacterial blooms in a brackish surface layer in the Nile River plume during sapropel deposition. Geology (Boulder Colo.) 47(11): 1088-1092. https://dx.doi.org/10.1130/g46682.1
    Bale, N.J.; Palatinszky, M.; Rijpstra, W.I.C.; Herbold, C.W.; Wagner, M.; Sinninghe Damsté, J.S (2019). Membrane lipid composition of the moderately thermophilic ammonia-oxidizing archaeon “Candidatus Nitrosotenuis uzonensis” at different growth temperatures. Appl. Environ. Microbiol. 85(20). https://dx.doi.org/10.1128/aem.01332-19
    Bale, N.J.; Rijpstra, W.I.C.; Sahonero Canavesi, D.X.; Oshkin, I.Y.; Belova, S.E.; Dedysh, S.N.; Sinninghe Damsté, J.S (2019). Fatty acid and hopanoid adaption to cold in the methanotroph Methylovulum psychrotolerans. Front. Microbiol. 10: article 589. https://dx.doi.org/10.3389/fmicb.2019.00589
    Bale, N.J.; Sorokin, D.Y.; Hopmans, E.C.; Koenen, M.; Rijpstra, W.I.C.; Villanueva, L.; Wienk, H.; Sinninghe Damsté, J.S. (2019). New insights into the polar lipid composition of extremely halo(alkali)philic euryarchaea from hypersaline lakes. Front. Microbiol. 10: article 377. https://dx.doi.org/10.3389/fmicb.2019.00377
    Baltar, F.; Bayer, B.; Bednaršek, N.; Deppeler, S.; Escribano, R.; Gonzalez, C.E.; Hansman, R.L.; Mishra, R.K.; Moran, M.A.; Repeta, D.J. (2019). Towards integrating evolution, metabolism, and climate change studies of marine ecosystems. Trends Ecol. Evol. 34(11): 1022-1033. https://dx.doi.org/10.1016/j.tree.2019.07.003
    Baltar, F.; Herndl, G.J. (2019). Ideas and perspectives: Is dark carbon fixation relevant for oceanic primary production estimates? Biogeosciences 16(19): 3793-3799. https://dx.doi.org/10.5194/bg-16-3793-2019
    Balzano, S.; Villanueva, L.; de Bar, M.; Sahonero Canavesi, D.X.; Yildiz, C.; Engelmann, J.C.; Maréchal, E.; Lupette, J.; Sinninghe Damsté, J.S.; Schouten, S. (2019). Biosynthesis of long chain alkyl diols and long chain alkenols in Nannochloropsis spp. (Eustigmatophyceae). Plant Cell Physiol. 60(8): 1666-1682. https://dx.doi.org/10.1093/pcp/pcz078
    Bart, M.C.; de Vet, S.J.; de Bakker, D.M.; Alexander, B.E.; Van Oevelen, D.; van Loon, E.E.; van Loon, J.W.A.; de Goeij, J.M. (2019). Spiculous skeleton formation in the freshwater sponge Ephydatia fluviatilis under hypergravity conditions. PeerJ 6: 6055. https://dx.doi.org/10.7717/peerj.6055
    Baxter, A.J.; Hopmans, E.C.; Russell, J.M.; Sinninghe Damsté, J.S (2019). Bacterial GMGTs in East African lake sediments: Their potential as palaeotemperature indicators. Geochim. Cosmochim. Acta 259: 155-169. https://dx.doi.org/10.1016/j.gca.2019.05.039
    Bayer, B.; Hansman, R.L.; Bittner, M.J.; Noriega-Ortega, B.E.; Niggemann, J.; Dittmar, T.; Herndl, G. (2019). Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean. Environ. Microbiol. 21(11): 4062-4075. https://dx.doi.org/10.1111/1462-2920.14755
    Bayer, B.; Pelikan, C.; Bittner, M.J.; Reinthaler, T.; Könneke, M.; Herndl, G.; Offre, P. (2019). Proteomic response of three marine ammonia-oxidizing archaea to hydrogen peroxide and their metabolic interactions with a heterotrophic alphaproteobacterium. mSystems 4(4): e00181-19. https://dx.doi.org/10.1128/msystems.00181-19
    Bayer, B.; Vojvoda, J.; Reinthaler, T.; Reyes, C.; Pinto, M.; Herndl, G.J. (2019). Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensis sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria. Int. J. Syst. Evol. Microbiol. 69(7): 1892-1902. https://dx.doi.org/10.1099/ijsem.0.003360
    Beltran, C.; Rousselle, G.; de Rafélis, M.; Sicre, M.-A.; Labourdette, N.; Schouten, S. (2019). Evolution of the zonal gradients across the equatorial Pacific during the Miocene–Pleistocene. J. Sedim. Res. 89(3): 242-252. https://dx.doi.org/10.2110/jsr.2019.15
    Besseling, M. (2019). Sources and genetic controls of lipid biomarkers involved in paleotemperature proxies. Utrecht Studies in Earth Sciences, 198. PhD Thesis. Utrecht University: Utrecht. ISBN 978-90-6266-556-3. https://hdl.handle.net/1874/386074
    Besseling, M.A.; Hopmans, E.C.; Koenen, M.; van der Meer, M.T.J.; Vreugdenhil, S.; Schouten, S.; Sinninghe Damsté, J.S; Villanueva, L. (2019). Depth-related differences in archaeal populations impact the isoprenoid tetraether lipid composition of the Mediterranean Sea water column. Org. Geochem. 135: 16-31. https://dx.doi.org/10.1016/j.orggeochem.2019.06.008
    Biggs, T.E.G.; Alvarez-Fernandez, S.; Evans, C.; Mojica, K.D.A.; Rozema, P.D.; Venables, H.J.; Pond, D.W.; Brussaard, C.P.D. (2019). Antarctic phytoplankton community composition and size structure: importance of ice type and temperature as regulatory factors. Polar Biol. 42(11): 1997-2015. https://dx.doi.org/10.1007/s00300-019-02576-3
    Bischof, L.F.; Haurat, M.F.; Hoffmann, L.; Albersmeier, A.; Wolf, J.; Neu, A.; Pham, T.K.; Albaum, S.P.; Jakobi, T.; Schouten, S.; Neumann-Schaal, M.; Wright, P.C.; Kalinowski, J.; Siebers, B.; Albers, S.-V. (2019). Early response of Sulfolobus acidocaldarius to nutrient limitation. Front. Microbiol. 9: 3201. https://dx.doi.org/10.3389/fmicb.2018.03201
    Blohs, M.; Mahnert, A.; Spang, A.; Dombrowski, N.; Krupovica, M.; Klingl, A. (2019). Archaea – An Introduction, in: Schmidt, R.M. Encyclopedia of Microbiology. pp. 243-252. https://dx.doi.org/10.1016/b978-0-12-809633-8.20884-4
    Bochdansky, A.B.; Dunbar, R.B.; Hansell, D.A.; Herndl, G.J. (2019). Estimating carbon flux from optically recording total particle volume at depths below the primary pycnocline. Front. Mar. Sci. 6. https://dx.doi.org/10.3389/fmars.2019.00778
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    Cardoso, D.C.; Cretoiu, M.S.; Stal, L.J.; Bolhuis, H. (2019). Seasonal development of a coastal microbial mat. NPG Scientific Reports 9: 9035. https://dx.doi.org/10.1038/s41598-019-45490-8
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    Talmy, D.; Beckett, S.J.; Taniguchi, D.A.A.; Brussaard, C.P.D.; Weitz, J.S.; Follows, M.J. (2019). An empirical model of carbon flow through marine viruses and microzooplankton grazers. Environ. Microbiol. 21(6): 2171-2181. https://dx.doi.org/10.1111/1462-2920.14626
    Thomson, B.; Wenley, J.; Currie, K.; Hepburn, C.; Herndl, G.J.; Baltar, F. (2019). Resolving the paradox: Continuous cell-free alkaline phosphatase activity despite high phosphate concentrations. Mar. Chem. 214: 103671. https://dx.doi.org/10.1016/j.marchem.2019.103671
    Tinta, T.; Kogovsek, T.; Klun, K.; Malej, A.; Herndl, G.J.; Turk, V. (2019). Jellyfish-associated microbiome in the marine environment: exploring its biotechnological potential. Mar. Drugs 17(2): 94. https://dx.doi.org/10.3390/md17020094
    van Maldegem, L.M.; Sansjofre, P.; Weijers, J.W.H.; Wolkenstein, K.; Strother, P.K.; Wörmer, L.; Hefter, J.; Nettersheim, B.J.; Hoshino, Y.; Schouten, S.; Sinninghe Damsté, J.S.; Nath, N.; Griesinger, C.; Kuznetsov, N.B.; Elie, M.; Elvert, M.; Tegelaar, E.; Gleixner, G.; Hallmann, C. (2019). Bisnorgammacerane traces predatory pressure and the persistent rise of algal ecosystems after Snowball Earth. Nature Comm. 10(1): 476. https://dx.doi.org/10.1038/s41467-019-08306-x
    van Vliet, D.M.; Palakawong Na Ayudthaya, S.; Diop, S.; Villanueva, L.; Stams, A.J.M.; Sánchez-Andrea, I. (2019). Anaerobic degradation of sulfated polysaccharides by two novel Kiritimatiellales strains isolated from Black Sea sediment. Front. Microbiol. 10: 253. https://dx.doi.org/10.3389/fmicb.2019.00253
    Visser, P.M.; Meesters, E.H.; van Duyl, F.C. (Ed.) (2019). Cruise report RV Pelagia 64PE430 : Bottom topography, groundwater discharge and cyanobacterial mats of mesophotic reefs, 25 January - 2 February 2018 Curaçao-Bonaire-Aruba (NICO expedition leg 3). NIOZ Royal Institute for Sea Research: Texel. 79 pp.
    Wang, F.; Liu, Y.; Su; Osinski, T.; de Oliveira; Conway; Schouten, S.; Krupovic, M.; Prangishvili, D.; Egelman, E.H. (2019). A packing for A-form DNA in an icosahedral virus. Proc. Natl. Acad. Sci. U.S.A. 116(45): 22591-22597. https://dx.doi.org/10.1073/pnas.1908242116
    Wang, K.J.; O'Donnell; Longo, W.M.; Amaral-Zettler, L.A.; Li, G.; Yao; Huang, Y. (2019). Group I alkenones and Isochrysidales in the world’s largest maar lakes and their potential paleoclimate applications. Org. Geochem. 138: 103924. https://dx.doi.org/10.1016/j.orggeochem.2019.103924
    Webb, A.E.; Pomponi, S.A.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2019). pH regulation and tissue coordination pathways promote calcium carbonate bioerosion by excavating sponges. NPG Scientific Reports 9(1): 758. https://dx.doi.org/10.1038/s41598-018-36702-8
    Wegley Kelly, L.; Nelson, C.E.; Haas, A.F.; Naliboff, D.S.; Calhoun, S.; Carlson, C.A.; Edwards; Fox, M.G.; Hatay, M.; Johnson, M.D.; Kelly, E.L.A.; Lim, Y.W.; Macherla, S.; Quinlan, Z.A.; Silva, G.G.Z.; Vermeij, M.J.A.; Zgliczynski, B.; Sandin, S.A.; Smith; Rohwer (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Comm. 10(1): 1691. https://dx.doi.org/10.1038/s41467-019-09419-z
    Weiss, G.M. (2019). Hydrogen isotope composition of algal chemical fossils: a tool for reconstructing paleo sea surface salinity. PhD Thesis. Utrecht University: Utrecht. ISBN 978-94-6375-466-8. 150 pp. https://hdl.handle.net/1874/384352
    Weiss, G.M.; de Bar, M.W.; Stolwijk, D.J.; Schouten, S.; Sinninghe Damsté, J.S.; van der Meer, M.T.J. (2019). Paleosensitivity of hydrogen isotope ratios of long‐chain alkenones to salinity changes at the Chile Margin. Paleoceanography and Paleoclimatology 34(6): 978-989. https://dx.doi.org/10.1029/2019pa003591
    Weiss, G.M.; Roepert, A.; Middelburg, J.J.; Schouten, S.; Sinninghe Damsté, J.S; van der Meer, M.T.J. (2019). Hydrogen isotope fractionation response to salinity and alkalinity in a calcifying strain of Emiliania huxleyi. Org. Geochem. 134: 62-65. https://dx.doi.org/10.1016/j.orggeochem.2019.06.001
    Weiss, G.M.; Schouten, S.; Sinninghe Damsté, J.S; Van der Meer, M.T.J. (2019). Constraining the application of hydrogen isotopic composition of alkenones as a salinity proxy using marine surface sediments. Geochim. Cosmochim. Acta 250: 34-48. https://doi.org/10.1016/j.gca.2019.01.038
    Willard, D.A.; Donders, T.H.; Reichgelt; Greenwood, D.R.; Sangiorgi, F.; Peterse, F.; Nierop, K.G.J.; Frieling, J.; Schouten, S.; Sluijs, A. (2019). Arctic vegetation, temperature, and hydrology during Early Eocene transient global warming events. Global Planet. Change 178: 139-152. https://dx.doi.org/10.1016/j.gloplacha.2019.04.012
    Witkowski, C.R.; Agostini, S.; Harvey, B.P.; van der Meer, M.T.J.; Sinninghe Damsté, J.S.; Schouten, S. (2019). Validation of carbon isotope fractionation in algal lipids as a pCO2 proxy using a natural CO2 seep (Shikine Island, Japan). Biogeosciences 16(22): 4451-4461. https://dx.doi.org/10.5194/bg-16-4451-2019
    Yao, H.; Hong, W.-L.; Panieri, G.; Sauer, S.; Torres, M.E.; Lehmann, M.F.; Gründger, F.; Niemann, H. (2019). Fracture-controlled fluid transport supports microbial methane-oxidizing communities at Vestnesa Ridge. Biogeosciences 16(10): 2221-2232. https://dx.doi.org/10.5194/bg-16-2221-2019
  • 2018
    Alvarez-Fernandez, S.; Bach, L.T.; Taucher, J.; Riebesell, U.; Sommer, U.; Aberle, N.; Brussaard, C.P.D.; Boersma, M. (2018). Plankton responses to ocean acidification: The role of nutrient limitation. Prog. Oceanogr. 165: 11-18. https://doi.org/10.1016/j.pocean.2018.04.006
    Amaral-Zettler, L.; Schmidt, V.; Smith, K. (2018). Microbial community and potential pathogen shifts along an ornamental fish supply chain. Microorganisms 6(3): 91. https://doi.org/10.3390/microorganisms6030091
    Bale, N.J.; Hopmans, E.C.; Dorhout, D.; Stal, L.J.; Grego, M.; van Bleijswijk, J.D.L.; Sinninghe Damsté, J.S.; Schouten, S. (2018). A novel heterocyst glycolipid detected in a pelagic N2 -fixing cyanobacterium of the genus Calothrix. Org. Geochem. 123: 44-47. https://doi.org/10.1016/j.orggeochem.2018.06.009
    Bale, N.J.; Villareal, T.A.; Hopmans, E.C.; Brussaard, C.P.D.; Besseling, M.; Dorhout, D.; Sinninghe Damsté, J.S.; Schouten, S. (2018). C5 glycolipids of heterocystous cyanobacteria track symbiont abundance in the diatom Hemiaulus hauckii across the tropical North Atlantic. Biogeosciences 15(4): 1229-1241. https://dx.doi.org/10.5194/bg-15-1229-2018
    Balzano, S.; Lattaud, J.; Villanueva, L.; Rampen, S.W.; Brussaard, C.P.D.; van Bleijswijk, J.; Bale, N.; Sinninghe Damsté, J.S.; Schouten, S. (2018). A quest for the biological sources of long chain alkyl diols in the western tropical North Atlantic Ocean. Biogeosciences 15(19): 5951-5968. https://doi.org/10.5194/bg-15-5951-2018
    Belova, S.E.; Ravin, N.V.; Pankratov, T.A.; Rakitin, A.L.; Ivanova, A.; Beletsky, A.V.; Mardanov, A.V.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2018). Hydrolytic capabilities as a key to environmental success: chitinolytic and cellulolytic Acidobacteria from acidic sub-arctic soils and boreal peatlands. Front. Microbiol. 9: 2775. https://doi.org/10.3389/fmicb.2018.02775
    Belova, S.E.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2018). Edaphobacter lichenicola sp. nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra. Int. J. Syst. Evol. Microbiol. 68(4): 1265-1270. https://dx.doi.org/10.1099/ijsem.0.002663
    Bergauer, K.; Fernàndez-Guerra, A.; Garcia, J.A.L.; Sprenger, R.R.; Stepanauskas, R.; Pachiadaki, M.G.; Jensen, O.N.; Herndl, G. (2018). Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proc. Natl. Acad. Sci. U.S.A. 115(3): E400-E408. https://dx.doi.org/10.1073/pnas.1708779115
    Besseling, M.A.; Hopmans, E.C.; Boschman, R.C.; Sinninghe Damsté, J.S.; Villanueva, L. (2018). Benthic archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone. Biogeosciences 15: 4047-4064. https://doi.org/10.5194/bg-15-4047-2018
    Bojanowski, M.J.; Ciurej, A.; Haczewski, G.; Jokubauskas, P.; Schouten, S.; Tyszka, J.; Bijl, P.K. (2018). The Central Paratethys during Oligocene as an ancient counterpart of the present-day Black Sea: Unique records from the coccolith limestones. Mar. Geol. 403: 301-328. https://doi.org/10.1016/j.margeo.2018.06.011
    Burian, A.; Grosse, J.; Winder, M.; Boschker, H.T.S. (2018). Nutrient deficiencies and the restriction of compensatory mechanisms in copepods. Funct. Ecol. 32(3): 636-647. https://doi.org/10.1111/1365-2435.13016
    Burson, A.; Stomp, M.; Greenwell, E.; Grosse, J.; Huisman, J. (2018). Competition for nutrients and light: testing advances in resource competition with a natural phytoplankton community. Ecology 99(5): 1108-1118. https://doi.org/10.1002/ecy.2187
    Buttigieg, P.L.; Fadeev, E.; Bienhold, C.; Hehemann, L.; Offre, P.; Boetius, A. (2018). Marine microbes in 4D - using time series observation to assess the dynamics of the ocean microbiome and its links to ocean health. Curr. Opin. Microbiol. 43: 169-185. https://dx.doi.org/10.1016/j.mib.2018.01.015
    Coxall, H.K.; Huck, C.E.; Huber, M.; Lear, C.H.; Legarda-Lisarri, A.; O'Regan, M.; Sliwinska, K.K.; van de Flierdt, T.; de Boer, A.M.; Zachos, J.C.; Backman, J. (2018). Export of nutrient rich northern component water preceded early Oligocene Antarctic glaciation. Nature Geoscience 11(3): 190-196. https://dx.doi.org/10.1038/s41561-018-0069-9
    Cramwinckel, M.J.; Huber, M.; Kocken, I.J.; Agnini, C.; Bijl, P.K.; Bohaty, S.M.; Frieling, J.; Goldner, A.; Hilgen, F.J.; Kip, E.L.; Peterse, F; van der Ploeg, R.; Röhl, U.; Schouten, S.; Sluijs, A. (2018). Synchronous tropical and polar temperature evolution in the Eocene. Nature (Lond.) 559(7714): 382-386. https://dx.doi.org/10.1038/s41586-018-0272-2
    de Bakker, D.M.; Webb, A.E.; van den Bogaart, L.A.; van Heuven, S.M.A.C.; Meesters, E.H.; van Duyl, F.C. (2018). Quantification of chemical and mechanical bioerosion rates of six Caribbean excavating sponge species found on the coral reefs of Curaçao. PLoS One 13(5): e0197824. https://dx.doi.org/10.1371/journal.pone.0197824
    de Bar, M.W.; Stolwijk, D.J.; McManus, J.F.; Sinninghe Damsté, J.S.; Schouten, S. (2018). A Late Quaternary climate record based on long-chain diol proxies from the Chilean margin. Clim. Past 14(11): 1783-1803. https://doi.org/10.5194/cp-14-1783-2018
    De Corte, D.; Srivastava, A.; Koski, M.; Garcia, J.A.L.; Takaki, Y.; Yokokawa, T.; Elisabeth, N.H.; Nunoura, T.; Sintes, E.; Herndl, G.J. (2018). Metagenomic insights into zooplankton-associated bacterial communities. Environ. Microbiol. 20(2): 492-505. https://dx.doi.org/10.1111/1462-2920.13944
    Dearing Crampton-Flood, E.; Peterse, F; Munsterman, D.; Sinninghe Damsté, J.S. (2018). Using tetraether lipids archived in North Sea Basin sediments to extract North Western European Pliocene continental air temperatures. Earth Planet. Sci. Lett. 490: 193-205. https://dx.doi.org/10.1016/j.epsl.2018.03.030
    Dedysh, S.N.; Sinninghe Damsté, J.S. (2018). Acidobacteria. Encycl. Life Sci. (Online) January. https://dx.doi.org/10.1002/9780470015902.a0027685
    Dessandier, P.-A.; Bonnin, J.; Malaizéa, B.; Lambert, C.; Tjallingii, R.; Warden, L.; Sinninghe Damsté, J.S.; Kim, J.-H (2018). Variations in benthic foraminiferal assemblages in the Tagus mud belt during the last 5700 years: Implications for Tagus River discharge. Palaeogeogr. Palaeoclimatol. Palaeoecol. 496: 225-237. https://doi.org/10.1016/j.palaeo.2018.01.040
    Dijkhuizen, L.W.; Brouwer, P.; Bolhuis, H.; Reichart, G.-J.; Koppers, N.; Huettel, B.; Bolger, A.M.; Li, F.-W.; Cheng, S.; Liu, X.; Wong, G.K.-S.; Pryer, K.; Weber, A.; Bräutigam, A.; Schluepmann, H. (2018). Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify. New Phytol. 217(1): 453-466. https://dx.doi.org/10.1111/nph.14843
    Dijkstra, N.; Kraal, P.; Séguret, M.J.M. ; Flores, M.R.; Gonzalez, S.; Rijkenberg, M.J.A.; Slomp, C.P. (2018). Phosphorus dynamics in and below the redoxcline in the Black Sea and implications for phosphorus burial. Geochim. Cosmochim. Acta 222: 685-703. https://dx.doi.org/10.1016/j.gca.2017.11.016
    Donders, T.H.; van Helmond, N.A.G.M.; Verreussel, R.; Munsterman, D.; ten Veen, J.; Speijer, R.P.; Weijers, J.W.H.; Sangiorgi, F.; Peterse, F.; Reichart, G.-J.; Sinninghe Damsté, J.S.; Lourens, L.; Kuhlmann, G.; Brinkhuis, H. (2018). Land–sea coupling of early Pleistocene glacial cycles in the southern North Sea exhibit dominant Northern Hemisphere forcing. Clim. Past 14(3): 397-411. https://doi.org/10.5194/cp-14-397-2018
    Egger, M.; Riedinger, N.; Mogollón, J.M.; Jørgensen, B.B. (2018). Global diffusive fluxes of methane in marine sediments. Nature Geoscience 11(6): 421-425. https://hdl.handle.net/10.1038/s41561-018-0122-8
    Engelen, A.H.; Aires, T.; Vermeij, M.J.A.; Herndl, G.J.; Serrão, E.A.; Frade, P.R. (2018). Host differentiation and compartmentalization of microbial communities in the azooxanthellate cupcorals Tubastrea coccinea and Rhizopsammia goesi in the Caribbean. Front. Mar. Sci. 5: 391. https://dx.doi.org/10.3389/fmars.2018.00391
    Freeman, S.E.; Freeman, L.A.; Giorli, G.; Haas, A.F. (2018). Photosynthesis by marine algae produces sound, contributing to the daytime soundscape on coral reefs. PLoS One 13(10): e0201766. https://dx.doi.org/10.1371/journal.pone.0201766
    Glock, N.; Erdem, Z.; Wallmann, K.; Somes, C.J.; Liebetrau, V.; Schönfeld, J.; Gorb, S.; Eisenhauer, A. (2018). Coupling of oceanic carbon and nitrogen facilitates spatially resolved quantitative reconstruction of nitrate inventories. Nature Comm. 9(1): 10 pp. https://doi.org/10.1038/s41467-018-03647-5
    Guerrero-Cruz, S.; Cremers, G.; van Alen, T.A.; Op den Camp, H.J.M.; Jetten, M.S.M.; Rasigraf, O.; Vaksmaa, A. (2018). Response of the anaerobic methanotroph “Candidatus Methanoperedens nitroreducens” to oxygen stress. Appl. Environ. Microbiol. 84(24). https://dx.doi.org/10.1128/aem.01832-18
    Guerrero-Feijóo, E.; Sintes, E.; Herndl, G.J.; Varela, M.M. (2018). High dark inorganic carbon fixation rates by specific microbial groups in the Atlantic off the Galician coast (NW Iberian margin). Environ. Microbiol. 20(2): 602-611. https://dx.doi.org/10.1111/1462-2920.13984
    Hartman, J.D.; Sangiorgi, F.; Salabarnada, A.; Peterse, F; Houben, A.J.P.; Schouten, S.; Brinkhuis, H.; Escutia, C.; Bijl, P.K. (2018). Paleoceanography and ice sheet variability offshore Wilkes Land, Antarctica – Part 3: Insights from Oligocene–Miocene TEX86-based sea surface temperature reconstructions. Clim. Past 14(9): 1275-1297. https://doi.org/10.5194/cp-14-1275-2018
    Hedayatkhah, A.; Cretoiu, M.S.; Emtiazi, G.; Stal, L.J.; Bolhuis, H. (2018). Bioremediation of chromium contaminated water by diatoms with concomitant lipid accumulation for biofuel production. J. Environ. Manage. 227: 313-320. https://doi.org/10.1016/j.jenvman.2018.09.011
    Heimhofer, U.; Wucherpfennig, N.; Adatte, T.; Schouten, S.; Schneebeli-Hermann, E.; Gardin, S.; Keller, G.; Kentsch, S.; Kujau, A. (2018). Vegetation response to exceptional global warmth during Oceanic Anoxic Event 2. Nature Comm. 9: 3832. https://doi.org/10.1038/s41467-018-06319-6
    Heinzelmann, S.M.; Villanueva, L.; Lipsewers, Y.A.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2018). Assessing the metabolism of sedimentary microbial communities using the hydrogen isotopic composition of fatty acids. Org. Geochem. 124: 123-132. https://doi.org/10.1016/j.orggeochem.2018.07.011
    Hoeksema, B.W.; Hassell, D.; Meesters, E.H.W.G.; van Duyl, F.C. (2018). Wave-swept coralliths of Saba Bank, Dutch Caribbean. Mar. Biodiv. 48(4): 2003-2016. https://dx.doi.org/10.1007/s12526-017-0712-5
    Hörnlein, C.; Confurius-Guns, V.; Stal, L.J.; Bolhuis, H. (2018). Daily rhythmicity in coastal microbial mats. npj Biofilms and Microbiomes 4: 11. https://doi.org/10.1038/s41522-018-0054-5
    Ismail, A.; Ktari, L.; Ahmed, M.; Bolhuis, H.; Bouhaouala-Zahar, B.; Stal, L.J.; Boudabbous, A.; El Bour, M. (2018). Heterotrophic bacteria associated with the green alga Ulva rigida: identification and antimicrobial potential. J. Appl. Phycol. 30(5): 2883-2899. https://doi.org/10.1007/s10811-018-1454-x
    Ivancic, I.; Paliaga, P.; Pfannkuchen, M.; Djakovac, T.; Najdek, M.; Steiner, P.; Korlevic, M.; Markovski, M.; Baricevic, A.; Tankovic, M.S.; Herndl, G. (2018). Seasonal variations in extracellular enzymatic activity in marine snow-associated microbial communities and their impact on the surrounding water. FEMS Microbiol. Ecol. 94(12): 11. https://doi.org/10.1093/femsec/fiy198
    Jaeschke, A.; Rethemeyer, J.; Lappé, M.; Schouten, S.; Boeckx, P.; Schefuß, E. (2018). Influence of land use on distribution of soil n-alkane δD and brGDGTs along an altitudinal transect in Ethiopia: Implications for (paleo)environmental studies. Org. Geochem. 124: 77-87. https://doi.org/10.1016/j.orggeochem.2018.06.006
    Kellner, S.; Spang, A.; Offre, P.; Szöllosi; Petitjean, C.; Williams, T.A. (2018). Genome size evolution in the Archaea. Emerging Topics in Life Sciences 2(4): ETLS20180021. https://dx.doi.org/10.1042/etls20180021
    Klunder, L.; van Bleijswijk, J.; van der Veer, H. (2018). Effect of an energy turbine on fish eDNA as indicator for species composition. NIOZ-rapport, 2018(7). NIOZ: Texel. 21 pp.
    Lattaud, J.; Kirkels, F.; Peterse, F.; Freymond, C.V.; Eglinton, T.I.; Hefter, J.; Mollenhauer, G.; Balzano, S.; Villanueva, L.; van der Meer, M.T.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2018). Long-chain diols in rivers: distribution and potential biological sources. Biogeosciences 15(13): 4147-4161. https://doi.org/10.5194/bg-15-4147-2018
    Lattaud, J.; Lo, L.; Huang, J.-J.; Chou, Y.-M.; Gorbarenko, S.A.; Sinninghe Damsté, J.S; Schouten, S. (2018). A comparison of Late Quaternary organic proxy-based paleotemperature records of the Central Sea of Okhotsk. Paleoceanography and Paleoclimatology 33(7): 732-744. https://dx.doi.org/10.1029/2018pa003388
    Lee, D.-H.; Kim, J.-H.; Lee, Y.M.; Stadnitskaia, A.; Jin, Y.K.; Niemann, H.; Kim, Y.-G.; Shin, K.-H. (2018). Biogeochemical evidence of anaerobic methane oxidation on active submarine mud volcanoes on the continental slope of the Canadian Beaufort Sea. Biogeosciences 15(24): 7419-7433. https://doi.org/10.5194/bg-15-7419-2018
    Lipsewers, Y.A.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Villanueva, L. (2018). Potential recycling of thaumarchaeotal lipids by DPANN Archaea in seasonally hypoxic surface marine sediments. Org. Geochem. 119: 101-109. https://dx.doi.org/10.1016/j.orggeochem.2017.12.007
    Liu, Y.; Osinski, T.; Wang, F.; Krupovic, M.; Schouten, S.; Kasson, P.; Prangishvili, D.; Egelman, E.H. (2018). Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile. Nature Comm. 9(1): 3360. https://doi.org/10.1038/s41467-018-05684-6
    Lo, L.; Belt, S.T.; Lattaud, J.; Friedrich, T.; Zeeden, C.; Schouten, S.; Smik, L.; Timmermann, A.; Cabedo-Sanz, P.; Huang, J.-J.; Zhou, L.; Ou, T.-H.; Chang, Y.-P.; Wang, L.-C.; Chou, Y.-M.; Shen, C.-C.; Chen, M.-T.; Wei, K.-Y.; Song, S.-R.; Fang, T.-H.; Gorbarenko, S.A.; Wang, W.-L.; Lee, T.-Q.; Elderfield, H.; Hodell, D.A. (2018). Precession and atmospheric CO2 modulated variability of sea ice in the central Okhotsk Sea since 130,000 years ago. Earth Planet. Sci. Lett. 488: 36-45. https://doi.org/10.1016/j.epsl.2018.02.005
    Luttikhuizen, P.C.; van den Heuvel, F.H.M.; Rebours, C.; Witte, H.J.; van Bleijswijk, J.D.L.; Timmermans, K. (2018). Strong population structure but no equilibrium yet: Genetic connectivity and phylogeography in the kelp Saccharina latissima (Laminariales, Phaeophyta). Ecol. Evol. 8(8): 4265-4277. https://doi.org/10.1002/ece3.3968
    Martijn, J.; Vosseberg, J.; Guy, L.; Offre, P.; Ettema, T.J. G. (2018). Deep mitochondrial origin outside the sampled alphaproteobacteria. Nature (Lond.) 557(7703): 101-105. https://doi.org/10.1038/s41586-018-0059-5
    Moerdijk-Poortvliet, T.C.W.; Beauchard, O.; Stal, L.J.; Boschker, H.T.S. (2018). Production and consumption of extracellular polymeric substances in an intertidal diatom mat. Mar. Ecol. Prog. Ser. 592: 77-95. https://dx.doi.org/10.3354/meps12481
    Moerdijk-Poortvliet, T.C.W.; van Breugel, P.; Sabbe, K.; Beauchard, O.; Stal, L.J.; Boschker, H.T.S. (2018). Seasonal changes in the biochemical fate of carbon fixed by benthic diatoms in intertidal sediments. Limnol. Oceanogr. 63(2): 550-569. https://dx.doi.org/10.1002/lno.10648
    Nakajima, R.; Haas, A.F.; Silveira, C.B.; Kelly, E.L.A.; Smith, J.E.; Sandin, S.; Kelly, L.W.; Rohwer, F.; Nakatomi, N.; Kurihara, H. (2018). Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. J. Exp. Mar. Biol. Ecol. 504: 53-60. https://dx.doi.org/10.1016/j.jembe.2018.02.008
    Narrowe, A.B.; Spang, A.; Stairs, C.W.; Caceres, E.F.; Baker, B.J.; Miller, C.S.; Ettema, T.J.G. (2018). Complex evolutionary history of translation elongation factor 2 and diphthamide biosynthesis in archaea and parabasalids. Genome Biology and Evolution 10(9): 2380-2393. https://doi.org/10.1093/gbe/evy154
    Nausch, M.; Achterberg, E.P.; Bach, L.T.; Brussaard, C.P.D.; Crawfurd, K.J.; Fabian, J.; Riebesell, U.; Stuhr, A.; Unger, J.; Wannicke, N. (2018). Concentrations and uptake of dissolved organic phosphorus compounds in the Baltic Sea. Front. Mar. Sci. 5: 386. https://doi.org/10.3389/fmars.2018.00386
    Noor, L.H.W.; van der Kroef, D.A.; Wattam, D.; Pinnock, M.; van Rossum, R.; Smit, M.G.; Brussaard, C.P.D. (2018). Innovative transportable laboratories for polar science. Polar Rec. 54(1): 18-28. https://doi.org/10.1017/S0032247418000050
    Piedade, G.; Wesdorp, E.; Montenegro-Borbolla, E.; Maat, D.; Brussaard, C. (2018). Influence of irradiance and temperature on the virus MpoV-45T infecting the Arctic picophytoplankter micromonas polaris. Viruses 10(12): 676. https://doi.org/10.3390/v10120676
    Raina, J.-B.; Eme, L.; Pollock, F.J.; Spang, A.; Archibald, J.M.; Williams, T.A. (2018). Symbiosis in the microbial world: from ecology to genome evolution. Biology Open 7(2): bio032524. https://doi.org/10.1242/bio.032524
    Reiche, S.; Rampen, S.W.; Dorhout, D.J.C.; Sinninghe Damsté, J.S.; Schouten, S. (2018). The impact of oxygen exposure on long-chain alkyl diols and the long chain diol index (LDI) – a long-term incubation study. Org. Geochem. 124: 238-246. https://doi.org/10.1016/j.orggeochem.2018.08.003
    Roach, T.N.F.; Salamon, P.; Nulton, J.; Andresen, B.; Felts, B.; Haas, A.; Calhoun, S.; Robinett, N.; Rohwer, F. (2018). Application of finite-time and control thermodynamics to biological processes at multiple scales. Journal of Non-Equilibrium Thermodynamics 43(3): 193-210. https://dx.doi.org/10.1515/jnet-2018-0008
    Rochman, F.; Kim, J.-J.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Schumann, P.; Verbeke, T.J.; Dunfield, P.F. (2018). Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond. Int. J. Syst. Evol. Microbiol. 68(4): 1078-1084. https://dx.doi.org/10.1099/ijsem.0.002624
    Romera-Castillo, C.; Pinto, M.; Langer, T.M.; Alvarez-Salgado, X.A.; Herndl, G. (2018). Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean. Nature Comm. 9(1): 7 pp. https://dx.doi.org/10.1038/s41467-018-03798-5
    Rush, D.; Erdem, Z. (2018). Cruise 64PE434: NICO Leg 7 GoMex: R/V Pelagia, 11-03-2018 to 04-04-2018, Philipsburg, Sint Maarten – Nassau, Bahamas. NIOZ: Texel. 63 pp.
    Russell, J.M.; Hopmans, E.C.; Loomis, S.E.; Liang, J.; Sinninghe Damsté, J.S. (2018). Distributions of 5- and 6-methyl branched glycerol dialkyl glycerol tetraethers (brGDGTs) in East African lake sediment: Effects of temperature, pH, and new lacustrine paleotemperature calibrations. Org. Geochem. 117: 56-69. https://dx.doi.org/10.1016/j.orggeochem.2017.12.003
    Sangiorgi, F.; Bijl, P.K.; Passchier, S.; Salzmann, U.; Schouten, S.; McKay, R.M.; Cody, R.D.; Pross, J.; van de Flierdt, T.; Bohaty, S.M.; Levy, R.; Williams, T.; Escutia, C.; Brinkhuis, H. (2018). Southern Ocean warming and Wilkes Land ice sheet retreat during the mid-Miocene. Nature Comm. 9(1): 317. https://dx.doi.org/10.1038/s41467-017-02609-7
    Schlitzer,R.; Anderson,R.F.; Dodas,E.M.; Lohan,M.; Geibert,W.; Tagliabue,A.; Bowie,A.; Jeandel,C.; Maldonado,M.T.; Landing,W.M.; Cockwell,D.; Abadie,C.; Abouchami,W.; Achterberg,E.P.; Agather,A.; Aguliar-Islas,A.; van Aken,H.M.; Andersen,M.; Archer,C.; Auro,M.; de Baar,H.J.; Baars,O.; Baker,A.R.; Bakker,K.; Basak,C.; Baskaran,M.; Bates,N.R.; Bauch,D.; van Beek,P.; Behrens,M.K.; Black,E.; Bluhm,K.; Bopp,L.; Bouman,H.; Bowman,K.; Bown,J.; Boyd,P.; Boye,M.; Boyle,E.A.; Branellec,P.; Bridgestock,L.; Brissebrat,G.; Browning,T.; Bruland,K.W.; Brumsack,H.-J.; Brzezinski,M.; Buck,C.S.; Buck,K.N.; Buesseler,K.; Bull,A.; Butler,E.; Cai,P.; Mor,P.C.; Cardinal,D.; Carlson,C.; Carrasco,G.; Casacuberta,N.; Casciotti,K.L.; Castrillejo,M.; Chamizo,E.; Chance,R.; Charette,M.A.; Chaves,J.E.; Cheng,H.; Chever,F.; Christl,M.; Church,T.M.; Closset,I.; Colman,A.; Conway,T.M.; Cossa,D.; Croot,P.; Cullen,J.T.; Cutter,G.A.; Daniels,C.; Dehairs,F.; Deng,F.; Dieu,H.T.; Duggan,B.; Dulaquais,G.; Dumousseaud,C.; Echegoyen-Sanz,Y.; Edwards,R.L.; Ellwood,M.; Fahrbach,E.; Fitzsimmons,J.N.; Russell Flegal,A.; Fleisher,M.Q.; van de Flierdt,T.; Frank,M.; Friedrich,J.; Fripiat,F.; Fröllje,H.; Galer,S.J.G.; Gamo,T.; Ganeshram,R.S.; Garcia-Orellana,J.; Garcia-Solsona,E.; Gault-Ringold,M.; George,E.; Gerringa,L.J.A.; Gilbert,M.; Godoy,J.M.; Goldstein,S.L.; Gonzalez,S.R.; Grissom,K.; Hammerschmidt,C.; Hartman,A.; Hassler,C.S.; Hathorne,E.C.; Hatta,M.; Hawco,N.; Hayes,C.T.; Heimbürger,L.-E.; Helgoe,J.; Heller,M.; Henderson,G.M.; Henderson,P.B.; van Heuven,S.; Ho,P.; Horner,T.J.; Hsieh,Y.-T.; Huang,K.-F.; Humphreys,M.P.; Isshiki,K.; Jacquot,J.E.; Janssen,D.J.; Jenkins,W.J.; John,S.; Jones,E.M.; Jones,J.L.; Kadko,D.C.; Kayser,R.; Kenna,T.C.; Khondoker,R.; Kim,T.; Kipp,L.; Klar,J.K.; Klunder,M.; Kretschmer,S.; Kumamoto,Y.; Laan,P.; Labatut,M.; Lacan,F.; Lam,P.J.; Lambelet,M.; Lamborg,C.H.; Le Moigne,F.A.C.; Le Roy,E.; Lechtenfeld,O.J.; Lee,J.-M.; Lherminier,P.; Little,S.; López-Lora,M.; Lu,Y.; Masque,P.; Mawji,E.; Mcclain,C.R.; Measures,C.; Mehic,S.; Barraqueta,J.-L.M.; van der Merwe,P.; Middag,R.; Mieruch,S.; Milne,A.; Minami,T.; Moffett,J.W.; Moncoiffe,G.; Moore,W.S.; Morris,P.J.; Morton,P.L.; Nakaguchi,Y.; Nakayama,N.; Niedermiller,J.; Nishioka,J.; Nishiuchi,A.; Noble,A.; Obata,H.; Ober,S.; Ohnemus,D.C.; van Ooijen,J.; O'Sullivan,J.; Owens,S.; Pahnke,K.; Paul,M.; Pavia,F.; Pena,L.D.; Peters,B.; Planchon,F.; Planquette,H.; Pradoux,C.; Puigcorbé,V.; Quay,P.; Queroue,F.; Radic,A.; Rauschenberg,S.; Rehkämper,M.; Rember,R.; Remenyi,T.; Resing,J.A.; Rickli,J.; Rigaud,S.; Rijkenberg,M.J.A.; Rintoul,S.; Robinson,L.F.; Roca-Martí,M.; Rodellas,V.; Roeske,T.; Rolison,J.M.; Rosenberg,M.; Roshan,S.; Rutgers van der Loeff,M.M.; Ryabenko,E.; Saito,M.A.; Salt,L.A.; Sanial,V.; Sarthou,G.; Schallenberg,C.; Schauer,U.; Scher,H.; Schlosser,C.; Schnetger,B.; Scott,P.; Sedwick,P.N.; Semiletov,I.; Shelley,R.; Sherrell,R.M.; Shiller,A.M.; Sigman,D.M.; Singh,S.K.; Slagter,H.A.; Slater,E.; Smethie,W.M.; Snaith,H.; Sohrin,Y.; Sohst,B.; Sonke,J.E.; Speich,S.; Steinfeldt,R.; Stewart,G.; Stichel,T.; Stirling,C.H.; Stutsman,J.; Swarr,G.J.; Swift,J.H.; Thomas,A.; Thorne,K.; Till,C.P.; Till,R.; Townsend,A.T.; Townsend,E.; Tuerena,R.; Twining,B.S.; Vance,D.; Velazquez,S.; Venchiarutti,C.; Villa-Alfageme,M.; Vivancos,S.M.; Voelker,A.H.L.; Wake,B.; Warner,M.J.; Watson,R.; van Weerlee,E.; Alexandra Weigand,M.; Weinstein,Y.; Weiss,D.; Wisotzki,A.; Woodward,E.M.S.; Wu,J.; Wu,Y.; Wuttig,K.; Wyatt,N.; Xiang,Y.; Xie,R.C.; Xue,Z.; Yoshikawa,H.; Zhang,J.; Zhang,P.; Zhao,Y.; Zheng,L.; Zheng,X.-Y.; Zieringer,M.; Zimmer,L.A.; Ziveri,P.; Zunino,P.; Zurbrick,C. (2018). The GEOTRACES Intermediate Data Product 2017. Chem. Geol. 493: 210-223. https://doi.org/10.1016/j.chemgeo.2018.05.040
    Schreuder, L.T.; Hopmans, E.C.; Stuut, J.-B.W.; Sinninghe Damsté, J.S.; Schouten, S. (2018). Transport and deposition of the fire biomarker levoglucosan across the tropical North Atlantic Ocean. Geochim. Cosmochim. Acta 227: 171-185. https://doi.org/10.1016/j.gca.2018.02.020
    Schreuder, L.T.; Stuut, J.-B. W.; Korte, L.F.; Sinninghe Damsté, J.S.; Schouten, S. (2018). Aeolian transport and deposition of plant wax n-alkanes across the tropical North Atlantic Ocean. Org. Geochem. 115: 113-123. https://doi.org/10.1016/j.orggeochem.2017.10.010
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Foesel, B.U.; Huber, K.J.; Overmann, J.; Nakagawa, S.; Kim, J.J.; Dunfield, P.F.; Dedysh, S.N.; Villanueva, L. (2018). An overview of the occurrence of ether- and ester- linked iso-diabolic acid membrane lipids in microbial cultures of the Acidobacteria: Implications for brGDGT paleoproxies for temperature and pH. Org. Geochem. 124: 63-76. https://doi.org/10.1016/j.orggeochem.2018.07.006
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; den Uijl, M.J.; Weijers, J.W.H.; Schouten, S. (2018). The enigmatic structure of the crenarchaeol isomer. Org. Geochem. 124: 22-28. https://dx.doi.org/10.1016/j.orggeochem.2018.06.005
    Sollai, M. (2018). Lipids as indicators of nitrogen cycling in present and past anoxic oceans. PhD Thesis. Utrecht University: Utrecht. ISBN 9789062665051. 271 pp. https://hdl.handle.net/1874/367934
    Sorokin, D.Y.; Khijniak, T.V.; Kostrikina, N.A.; Elcheninov, A.G.; Toshchakov, S.V.; Bale, N.J.; Sinninghe Damsté, J.S; Kublanov, I.V. (2018). Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes. Syst. Appl. Microbiol. 41(4): 355-362. https://dx.doi.org/10.1016/j.syapm.2018.04.002
    Sorokin, D.Y.; Merkel, A.Y.; Abbas, B.; Makarova, K.S.; Rijpstra, W.I.C.; Koenen, M.; Sinninghe Damsté, J.S.; Galinski, E.A.; Koonin, E.V.; van Loosdrecht, M.C.M. (2018). Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov. Int. J. Syst. Evol. Microbiol. 68(7): 2199-2208. https://doi.org/10.1099/ijsem.0.002810
    Steinle, L.; Knittel, K.; Felber, N.; Casalino, C.; de Lange, G.; Tessarolo, C.; Stadnitskaia, A.; Sinninghe Damsté, J.S.; Zopfi, J.; Lehmann, M.F.; Treude, T.; Niemann, H. (2018). Life on the edge: active microbial communities in the Kryos MgCl2-brine basin at very low water activity. ISME J. 12(6): 1414-1426. https://dx.doi.org/10.1038/s41396-018-0107-z
    Taylor, B.; Weitz, J.; Brussaard, C.; Fischer, M. (2018). Quantitative infection dynamics of Cafeteria roenbergensis virus. Viruses 10(9): 468. https://doi.org/10.3390/v10090468
    Timmers, P.H.A.; Vavourakis, C.D.; Kleerebezem, R.; Sinninghe Damsté, J.S; Muyzer, G.; Stams, A.J.M.; Sorokin, D.Y.; Plugge, C.M. (2018). Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments. Front. Microbiol. 9(3039). https://dx.doi.org/10.3389/fmicb.2018.03039
    van Bree, L.G.J.; Islam, M.M.; Rijpstra, W.I.C.; Verschuren, D.; van Duin, A.T.C.; Sinninghe Damste, J.S.; de Leeuw, J.W. (2018). Origin, formation and environmental significance of des-A-arborenes in the sediments of an East African crater lake. Org. Geochem. 125: 95-108. https://doi.org/10.1016/j.orggeochem.2018.09.001
    van Bree, L.G.J.; Peterse, F.; van der Meer, M.T.J.; Middelburg, J.J.; Negash, A.M.D.; De Crop, W.; Cocquyt, C.; Wieringa, J.J.; Verschuren, D.; Sinninghe Damsté, J.S. (2018). Seasonal variability in the abundance and stable carbon-isotopic composition of lipid biomarkers in suspended particulate matter from a stratified equatorial lake (Lake Chala, Kenya/Tanzania): Implications for the sedimentary record. Quat. Sci. Rev. 192: 208-224. https://doi.org/10.1016/j.quascirev.2018.05.023
    van de Poll, W.H.; Kulk, G.; Rozema, P.D.; Brussaard, C.P.D.; Visser, R.J.W.; Buma, A.G.J. (2018). Contrasting glacial meltwater effects on post-bloom phytoplankton on temporal and spatial scales in Kongsfjorden, Spitsbergen. Elem. Sci. Anth. 6(1): 50. https://doi.org/10.1525/elementa.307
    van der Veer, H.W.; Cardoso, J.F.M.F.; Mateo, I.; Witte, J.IJ.; van Duyl, F.C. (2018). Occurrence and life history characteristics of tropical flatfishes at the coral reefs of Curaçao, Dutch Caribbean. J. Sea Res. 142: 157-166. https://dx.doi.org/10.1016/j.seares.2018.09.010
    van Duyl, F.C.; Meesters, E.H. (2018). Cruise report RV Pelagia 64PE433 : Saba, St Eustatius and Saba Bank Benthic habitat mapping, and Benthic–Pelagic coupling, 26 February - 10 March 2018, St Maarten-St Maarten (NICO expedition leg 6). NIOZ: Texel. 60 pp.
    van Duyl, F.C.; Mueller, B.; Meesters, E.H. (2018). Spatio–temporal variation in stable isotope signatures (δ13C and δ15N) of sponges on the Saba Bank. PeerJ 6: e5460. https://doi.org/10.7717/peerj.5460
    van Heuven, S.M.A.C.; Webb, A.E.; de Bakker, D.M.; Meesters, E.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2018). In-situ incubation of a coral patch for community-scale assessment of metabolic and chemical processes on a reef slope. PeerJ 6: e5966. https://dx.doi.org/10.7717/peerj.5966
    Van Oevelen, D.; Mueller, C.E.; Lundälv, T.; van Duyl, F.C.; de Goeij, J.M.; Middelburg, J.J. (2018). Niche overlap between a cold-water coral and an associated sponge for isotopically-enriched particulate food sources. PLoS One 13(3): e0194659. https://dx.doi.org/10.1371/journal.pone.0194659
    Vandieken, V.; Marshall, I.P.G.; Niemann, H.; Engelen, B.; Cypionka, H. (2018). Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea. Front. Microbiol. 8: 2614. https://dx.doi.org/10.3389/fmicb.2017.02614
    Villanueva, L. (2018). Engineering E. coli to have a hybrid Archaeal/Bacterial membrane. Trends microbiol. (Regul. ed.) 26(7): 559-560. https://dx.doi.org/10.1016/j.tim.2018.05.003
    Warden, L.; Moros, M.; Weber, Y.; Sinninghe Damsté, J.S (2018). Change in provenance of branched glycerol dialkyl glycerol tetraethers over the Holocene in the Baltic Sea and its impact on continental climate reconstruction. Org. Geochem. 121: 138-154. https://doi.org/10.1016/j.orggeochem.2018.03.007
    Weber, Y.; Sinninghe Damsté, J.S; Zopfi, J.; de Jonge, C.; Gilli, A.; Schubert, C.J.; Lepori, F.; Lehmann, M.F.; Niemann, H. (2018). Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes. Proc. Natl. Acad. Sci. U.S.A. 115(43): 10926-10931. https://dx.doi.org/10.1073/pnas.1805186115
    Wegley Kelly, L.; Haas, A.F.; Nelson, C.E. (2018). Ecosystem microbiology of coral reefs: linking genomic, metabolomic, and biogeochemical dynamics from animal symbioses to reefscape processes. mSystems 3(2): e00162-17. https://dx.doi.org/10.1128/msystems.00162-17
    Witkowski, C.R.; Weijers, J.W.H.; Blais, B.; Schouten, S.; Sinninghe Damsté, J.S. (2018). Molecular fossils from phytoplankton reveal secular Pco2 trend over the Phanerozoic. Science Advances 4(11): eaat4556. https://doi.org/10.1126/sciadv.aat4556
  • 2017
    Bale, N.; de Vries, S.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2017). A method for quantifying heterocyst glycolipids in biomass and sediments. Org. Geochem. 110: 33-35. https://dx.doi.org/10.1016/j.orggeochem.2017.04.010
    Balzano, S.; Villanueva, L.; de Bar, M.; Sinninghe Damsté, J.S.; Schouten, S. (2017). Impact of culturing conditions on the abundance and composition of long chain alkyl diols in species of the genus Nannochloropsis. Org. Geochem. 108: 9-17. https://dx.doi.org/10.1016/j.orggeochem.2017.02.006
    Bolhuis, H.; Martín-Cuadrado, A.B.; Rosselli, R.; Pašic, L.; Rodriguez-Valera, F (2017). Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface. BMC Genom. 18(1): 14. https://dx.doi.org/10.1186/s12864-017-3892-2
    Booij, K.; Maarsen, N.L.; Theeuwen, M.; van Bommel, R. (2017). A method to account for the effect of hydrodynamics on polar organic compound uptake by passive samplers. Environ. Toxicol. Chem. 36(6): 1517-1524. https://dx.doi.org/10.1002/etc.3700
    Booij, K.; Smedes, F.; Crum, S. (2017). Laboratory performance study for passive sampling of nonpolar chemicals in water. Environ. Toxicol. Chem. 36(5): 1156-1161. https://dx.doi.org/10.1002/etc.3657
    Brankovits, D.; Pohlman, J.W.; Niemann, H.; Leigh, M.B.; Leewis, M.C.; Becker, K.W.; Iliffe, T.M.; Alvarez, F.; Lehmann, M.F.; Phillips, B. (2017). Methane- and dissolved organic carbon-fueled microbial loop supports a tropical subterranean estuary ecosystem. Nature Comm. 8(1): 12 pp. https://dx.doi.org/10.1038/s41467-017-01776-x
    Burdorf, L.D.W.; Tramper, A.; Seitaj, D.; Meire, L.; Hidalgo-Martinez, S.; Zetsche, E.-M.; Boschker, H.T.S.; Meysman, F.J.R. (2017). Long-distance electron transport occurs globally in marine sediments. Biogeosciences 14(3): 683-701. https://dx.doi.org/10.5194/bg-14-683-2017
    Cardoso, D.C.; Sandionigi, A.; Cretoiu, M.S; Casiraghi, M.; Stal, L.; Bolhuis, H. (2017). Comparison of the active and resident community of a coastal microbial mat. NPG Scientific Reports 7: 2969. https://dx.doi.org/10.1038/s41598-017-03095-z
    Christianen, M.J.A.; Middelburg, J.J.; Holthuijsen, S.J.; Jouta, J.; Compton, T.J.; van der Heide, T.; Piersma, T.; Sinninghe Damsté, J.S.; van der Veer, H.W.; Schouten, S.; Olff, H. (2017). Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale. Ecology 98(6): 1498-1512. https://dx.doi.org/10.1002/ecy.1837
    Clifford, E.L.; Hansell, D.A.; Varela, M.M.; Nieto-Cid, M.; Herndl, G.J.; Sintes, E. (2017). Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean. Limnol. Oceanogr. 62(6): 2745-2758. https://dx.doi.org/10.1002/lno.10603
    Coutinho, F.H.; Silveira, C.B.; Gregoracci, G.B.; Thompson, C.; Edwards, R.A.; Brussaard, C.P.D.; Dutilh, B.E.; Thompson, F.L. (2017). Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nature Comm. 8: 15955. https://dx.doi.org/10.1038/ncomms15955
    Crawfurd, K.J.; Alvarez-Fernandez, S.; Mojica, K.D.A.; Riebesell, U.; Brussaard, C.P.D. (2017). Alterations in microbial community composition with increasing fCO2: a mesocosm study in the eastern Baltic Sea. Biogeosciences 14(16): 3831-3849. https://dx.doi.org/10.5194/bg-14-3831-2017
    de Bakker, D.M.; van Duyl, F.C.; Bak, R.P.M.; Nugues, M.M.; Nieuwland, G.; Meesters, E.H. (2017). 40 Years of benthic community change on the Caribbean reefs of Curaçao and Bonaire: the rise of slimy cyanobacterial mats. Coral Reefs 36(2): 355-367. https://dx.doi.org/10.1007/s00338-016-1534-9
    de Bar, M.W.; Hopmans, E.C.; Verweij, M.; Dorhout, D.J.C.; Sinninghe Damsté, J.S.; Schouten, S. (2017). Development and comparison of chromatographic methods for the analysis of long chain diols and alkenones in biological materials and sediment. J. Chromatogr. 1521: 150-160. https://dx.doi.org/10.1016/j.chroma.2017.09.037
    De Tender, C.; Schlundt, C.; Devriese, L.; Mincer, T.J.; Zettler, E.R.; Amaral-Zettler, L.A. (2017). A review of microscopy and comparative molecular-based methods to characterize “Plastisphere” communities. Anal. Methods 9(14): 2132-2143. https://dx.doi.org/10.1039/c7ay00260b
    Debeljak, P.; Proietti, M.; Reisser, J.; Ferrari, F.F.; Abbas, B.; van Loosdrecht, M.C.M.; Slat, B.; Herndl, G.J. (2017). Extracting DNA from ocean microplastics: a method comparison study. Anal. Methods 9(9): 1521-1526. https://dx.doi.org/10.1039/C6AY03119F
    Denis, E.H.; Pedentchouk, N.; Schouten, S.; Pagani, M.; Freeman, K.H. (2017). Fire and ecosystem change in the Arctic across the Paleocene-Eocene Thermal Maximum. Earth Planet. Sci. Lett. 467: 149-156. https://dx.doi.org/10.1016/j.epsl.2017.03.021
    Elling, F.J.; Könneke, M.; Nicol, G.W.; Stieglmeier, M.; Bayer, B.; Spieck, E.; de la Torre, J.R.; Becker, K.W.; Thomm, M.; Prosser, J.I.; Herndl, G.J.; Schleper, C.; Hinrichs, K.-U. (2017). Chemotaxonomic characterisation of the thaumarchaeal lipidome. Environ. Microbiol. 19(7): 2681-2700. https://doi.org/10.1111/1462-2920.13759
    Erdem, Z.; Schönfeld, J. (2017). Pleistocene to Holocene benthic foraminiferal assemblages from the Peruvian continental margin. Palaeontologia Electronica 20(2): 35A. https://doi.org/10.26879/764
    Evans, C.; Brandsma, J.; Pond, D.W.; Venables, H.J.; Meredith, M.P.; Witte, H.J.; Stammerjohn, S.; Wilson, W.H.; Clarke, A.; Brussaard, C.P.D. (2017). Drivers of interannual variability in virioplankton abundance at the coastal western Antarctic peninsula and the potential effects of climate change. Environ. Microbiol. 19(2): 740-755. https://dx.doi.org/10.1111/1462-2920.13627
    Fernández-García, J.L.; de Ory, A.; Brussaard, C.P.D.; de Vega, M. (2017). Phaeocystis globosa Virus DNA Polymerase X: a “Swiss Army knife”, Multifunctional DNA polymerase-lyase-ligase for Base Excision Repair. NPG Scientific Reports 7(1): 13. https://dx.doi.org/10.1038/s41598-017-07378-3
    Frieling, J.; Gebhardt, H.; Huber, M.; Adekeye, O.A.; Akande, S.O.; Reichart, G.-J.; Middelburg, J.J.; Schouten, S.; Sluijs, A. (2017). Extreme warmth and heat-stressed plankton in the tropics during the Paleocene-Eocene Thermal Maximum. Science Advances 3(3): e1600891. https://dx.doi.org/10.1126/sciadv.1600891
    Glasl, B.; Bongaerts, P.; Elisabeth, N.H.; Hoegh-Guldberg, O.; Herndl, G.J.; Frade, P.R. (2017). Microbiome variation in corals with distinct depth distribution ranges across a shallow–mesophotic gradient (15–85 m). Coral Reefs 36(2): 447-452. https://dx.doi.org/10.1007/s00338-016-1517-x
    Grosse, J.; Burson, A.; Stomp, M.; Huisman, J.; Boschker, H.T.S. (2017). From Ecological Stoichiometry to Biochemical Composition: Variation in N and P Supply Alters Key Biosynthetic Rates in Marine Phytoplankton. Front. Microbiol. 8: 1299. https://dx.doi.org/10.3389/fmicb.2017.01299
    Grosse, J.; van Breugel, P.; Brussaard, C.P.D.; Boschker, H.T.S. (2017). A biosynthesis view on nutrient stress in coastal phytoplankton. Limnol. Oceanogr. 62(2): 490-506. https://dx.doi.org/10.1002/lno.10439
    Guimarães, P.; Yunes, J.S.; Cretoiu, M.S.; Stal, L.J. (2017). Growth Characteristics of an Estuarine Heterocystous Cyanobacterium. Front. Microbiol. 8: 1132. https://dx.doi.org/10.3389/fmicb.2017.01132
    Highfield, A.; Joint, I.; Gilbert, J.A.; Crawfurd, K.J.; Schroeder, D.C. (2017). Change in Emiliania huxleyi Virus Assemblage Diversity but Not in Host Genetic Composition during an Ocean Acidification Mesocosm Experiment. Viruses 9(3): 41. https://dx.doi.org/10.3390/v9030041
    Holtvoeth, J.; Vogel, H.; Valsecchi, V.; Lindhorst, K.; Schouten, S.; Wagner, B.; Wolff, G.A. (2017). Linear and non-linear responses of vegetation and soils to glacial-interglacial climate change in a Mediterranean refuge. NPG Scientific Reports 7(1): 7. https://dx.doi.org/10.1038/s41598-017-08101-y
    Hornick, T.; Bach, L.T.; Crawfurd, K.J.; Spilling, K.; Achterberg, E.P.; Woodhouse, J.N.; Schulz, K.G.; Brussaard, C.P.D.; Riebesell, U.; Grossart, H.-P. (2017). Ocean acidification impacts bacteria – phytoplankton coupling at low-nutrient conditions. Biogeosciences 14(1): 1-15. dx.doi.org/10.5194/bg-14-1-2017
    Jaramillo, C.; Romero, I.; D’Apolito, C.; Bayona, G.; Duarte, E.; Louwye, S.; Escobar, J.; Luque, J.; Carrillo-Briceño, J.D.; Zapata, V.; Mora, A.; Schouten, S.; Zavada, M.; Harrington, G.; Ortiz, J.; Wesselingh, F.P. (2017). Miocene flooding events of western Amazonia. Science Advances 3(5): e1601693. https://dx.doi.org/10.1126/sciadv.1601693
    Kaiser, J.; van der Meer, M.T.J.; Arz, H.W. (2017). Long-chain alkenones in Baltic Sea surface sediments: New insights. Org. Geochem. 112: 93-104. https://dx.doi.org/10.1016/j.orggeochem.2017.07.002
    Kandiano, E.S.; van der Meer, M.T.J.; Schouten, S.; Fahl, K.; Sinninghe Damsté, J.S.; Bauch, H.A. (2017). Response of the North Atlantic surface and intermediate ocean structure to climate warming of MIS 11. NPG Scientific Reports 7: 46192. https://dx.doi.org/10.1038/srep46192
    Kasson, P.; DiMaio, F.; Yu, X.; Lucas-Staat, S.; Krupovic, M.; Schouten, S.; Prangishvili, D.; Egelman, E.H. (2017). Model for a novel membrane envelope in a filamentous hyperthermophilic virus. eLIFE 6: e26268. https://dx.doi.org/10.7554/eLife.26268.001
    Kim, J.J.; Marjerrison, C.E.; Cornish Shartau, S.L.; Brady, A.L.; Sharp, C.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Schumann, P.; Grasby, S.E.; Dunfield, P.F. (2017). Actinocrinis puniceicyclus gen. nov., sp nov., an actinobacterium isolated from an acidic spring. Int. J. Syst. Evol. Microbiol. 67(3): 602-609. https://dx.doi.org/10.1099/ijsem.0.001667
    Korte, L.F.; Brummer, G.-J. A.; van der Does, M.; Guerreiro, C.V.; Hennekam, R.; van Hateren, J.A.; Jong, D.; Munday, C.I.; Schouten, S.; Stuut, J-B W. (2017). Downward particle fluxes of biogenic matter and Saharan dust across the equatorial North Atlantic. Atmos. Chem. Phys. 17(9): 6023-6040. https://dx.doi.org/10.5194/acp-17-6023-2017
    Köstner, N.; Scharnreitner, L.; Jürgens, K.; Labrenz, M.; Herndl, G.J.; Winter, C. (2017). High viral abundance as a consequence of low viral decay in the Baltic Sea redoxcline. PLoS One 12(6): e0178467. https://dx.doi.org/10.1371/journal.pone.0178467
    Kulichevskaya, I.S.; Ivanova, A.; Baulina, O.I.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2017). Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov. Int. J. Syst. Evol. Microbiol. 67: 218–224. https://dx.doi.org/10.1099/ijsem.0.001598
    Kulichevskaya, I.S.; Ivanova, A.A.; Detkova, E.N.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2017). Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family Isosphaeraceae from lichen-dominated tundra soils. Int. J. Syst. Evol. Microbiol. 67(9): 3583-3589. https://dx.doi.org/10.1099/ijsem.0.002172
    Landry, Z.; Swan, B.K.; Herndl, G.J.; Stepanauskas, R.; Giovannonia, S.J. (2017). SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation ofRecalcitrant Dissolved Organic Matter. Mbio 8(2): e00413-17. https://dx.doi.org/10.1128/mBio.00413-17
    Lattaud, J.; Dorhout, D.; Schulz, H.; Castañeda, I.S.; Schefuß, E.; Sinninghe Damsté, J.S.; Schouten, S. (2017). The C32 alkane-1,15-diol as a proxy of late Quaternary riverine input in coastal margins. Clim. Past 13(8): 1049-1061. https://doi.org/10.5194/cp-13-1049-2017
    Lattaud, J.; Kim, J.-H; de Jonge, C.; Zell, C.; Sinninghe Damsté, J.S.; Schouten, S. (2017). The C32 alkane-1,15-diol as a tracer for riverine input in coastal seas. Geochim. Cosmochim. Acta 202: 146-158. https://dx.doi.org/10.1016/j.gca.2016.12.030
    Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2017). A seasonal study of particulate organic matter composition and quality along an offshore transect in the southern North Sea. Est., Coast. and Shelf Sci. 188: 1-11. https://dx.doi.org/10.1016/j.ecss.2017.02.002
    Lipsewers, Y.A. (2017). Role of chemolithoautotrophic microorganisms involved in nitrogen and sulfur cycling in coastal marine sediments. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-4924. 225 pp. https://hdl.handle.net/1874/357552
    Lipsewers, Y.A.; Vasquez Cardenas, D.; Seitaj, D.; Schauer, R.; Hidalgo-Martinez, S.; Sinninghe Damsté, J.S.; Meysman, F.J.R.; Villanueva, L.; Boschker, H.T.S. (2017). Impact of seasonal hypoxia on activity and community structure of chemolithoautotrophic bacteria in a coastal sediment. Appl. Environ. Microbiol. 83(10): e03517-16. https://dx.doi.org/10.1128/aem.03517-16
    Loomis, S.E.; Russell, J.M.; Verschuren, D.; Morrill, C.; De Cort, G.; Sinninghe Damsté, J.S.; Olago, D.; Eggermont, H.; Street-Perrott, F.A.; Kelly, M.A. (2017). The tropical lapse rate steepened during the Last Glacial Maximum. Science Advances 3(1): e1600815. https://dx.doi.org/10.1126/sciadv.1600815
    Luria, C.M.; Amaral-Zettler, L.A.; Ducklow, H.W.; Repeta, D.J.; Rhyne, A.L.; Rich, J.J. (2017). Seasonal Shifts in Bacterial Community Responses to Phytoplankton-Derived Dissolved Organic Matter in the Western Antarctic Peninsula. Front. Microbiol. 8: 2117. https://dx.doi.org/10.3389/fmicb.2017.02117
    Maat, D.S.; Biggs, T.; Evans, C.; van Bleijswijk, J.D.L.; van der Wel, N.; Dutilh, B.E.; Brussaard, C.P.D. (2017). Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses. Viruses 9(6): 134. https://dx.doi.org/10.3390/v9060134
    Middelboe, M.; Brussaard, C.P.D. (2017). Marine Viruses: Key Players in Marine Ecosystems. Viruses 9(12): 302. https://dx.doi.org/10.3390/v9100302
    Mueller, B.; Meesters, E.H.; van Duyl, F.C. (2017). DOC concentrations across a depth-dependent light gradient on a Caribbean coral reef. PeerJ 5: e3456. https://dx.doi.org/10.7717/peerj.3456
    Naghoni, A.; Emtiazi, G.; Amoozegar, M.A.; Cretoiu, M.S.; Stal, L.J.; Etemadifar, Z.; Shahzadeh Fazeli, S.A.; Bolhuis, H. (2017). Microbial diversity in the hypersaline Lake Meyghan, Iran. NPG Scientific Reports 7(1): 11522. https://dx.doi.org/10.1038/s41598-017-11585-3
    Nierop, K.G.J.; Reichart, G.-J.; Veld, H.; Sinninghe Damsté, J.S. (2017). The influence of oxygen exposure time on the composition of macromolecular organic matter as revealed by surface sediments on the Murray Ridge (Arabian Sea). Geochim. Cosmochim. Acta 206: 40-56. dx.doi.org/10.1016/j.gca.2017.02.032
    O'Brien, C.L.; Robinson, S.A.; Pancost, R.D.; Sinninghe Damsté, J.S.; Schouten, S.; Lunt, D.J.; Alsenz, H.; Bornemann, A.; Bottini, C.; Brassell, S.C.; Farnsworth, A.; Forster, A.; Huber, B.T.; Inglis, G.N.; Jenkyns, H.C.; Linnert, C.; Littler, K.; Markwick, P.; McAnena, A.; Mutterlose, J.; Naafs, B.D.A.; Püttmann, W.; Sluijs, A.; van Helmond, N.A.G.M.; Vellekoop, J.; Wagner, T.; Wrobel, N.E. (2017). Cretaceous sea-surface temperature evolution: Constraints from TEX86 and planktonic foraminiferal oxygen isotopes. Earth-Sci. Rev. 172: 224-247. https://dx.doi.org/10.1016/j.earscirev.2017.07.012
    Osborne, K.A.; Gray, N.D.; Sherry, A.; Leary, P.; Mejeha, O.; Bischoff, J.; Rush, D.; Sidgwick, F.R.; Birgel, D.; Kalyuzhnaya, M.; Talbot, H.M. (2017). Methanotroph-derived bacteriohopanepolyol signatures as a function of temperature related growth, survival, cell death and preservation in the geological record. Environmental Microbiology Reports 9(5): 492-500. https://doi.org/10.1111/1758-2229.12570
    Pachiadaki, M.G.; Sintes, E.; Bergauer, K.; Brown, J.M.; Record, N.R.; Swan, B.K.; Mathyer, M.E.; Hallam, S.J.; López-Garcìa, P.; Takaki, Y.; Nunoura, T.; Woyke, T.; Herndl, G.J.; Stepanauskas, R. (2017). Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. Science (Wash.) 358(6366): 1046-1051. https://dx.doi.org/10.1126/science.aan8260
    Petras, D.; Koester, I.; Da Silva, R.; Stephens, B.M.; Haas, A.F.; Nelson, C.E.; Kelly, L.W.; Aluwihare, L.I.; Dorrestein, P.C. (2017). High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter. Front. Mar. Sci. 4: 405. https://dx.doi.org/10.3389/fmars.2017.00405
    Randlett, M.-E.; Bechtel, A.; van der Meer, M.T.J.; Peterse, F; Litt, T.; Pickarski, N.; Kwiecien, O.; Stockhecke, M.; Wehrli, B.; Schubert, C.J. (2017). Biomarkers in Lake Van sediments reveal dry conditions in eastern Anatolia during 110.000-10.000 years B.P. Geochem. Geophys. Geosyst. 18(2): 571-583. dx.doi.org/10.1002/2016gc006621
    Reed, D.C.; Deemer, B.R.; van Grinsven, S.; Harrison, J.A. (2017). Are elusive anaerobic pathways key methane sinks in eutrophic lakes and reservoirs? Biogeochemistry 134(1-2): 29-39. https://dx.doi.org/10.1007/s10533-017-0356-3
    Rozema, P.D.; Biggs, T.; Sprong, P.A.A.; Buma, A.G.J.; Venables, H.J.; Evans, C.; Meredith, M.P.; Bolhuis, H. (2017). Summer microbial community composition governed by upper-ocean stratification and nutrient availability in northern Marguerite Bay, Antarctica. Deep-Sea Res., Part II, Top. Stud. Oceanogr. 139: 151-166. https://dx.doi.org/10.1016/j.dsr2.2016.11.016
    Rush, D.; Sinninghe Damsté, J.S. (2017). Lipids as paleomarkers to constrain the marine nitrogen cycle. Environ. Microbiol. 19(6): 2119–2132,. https://dx.doi.org/10.1111/1462-2920.13682
    Schmidt, V.; Gomez-Chiarri, M.; Roy, C.; Smith, K.; Amaral-Zettler, L. (2017). Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish. mSystems 2(6): e00133-17. https://dx.doi.org/10.1128/msystems.00133-17
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Dedysh, S.N.; Foesel, B.U.; Villanueva, L. (2017). Pheno- and Genotyping of Hopanoid Production in Acidobacteria. Front. Microbiol. 8: 968. https://dx.doi.org/10.3389/fmicb.2017.00968
    Sollai, M.; Hopmans, E.C.; Bale, N.J.; Mets, A.; Warden, L.; Moros, M.; Sinninghe Damsté, J.S. (2017). The Holocene sedimentary record of cyanobacterial glycolipids in the Baltic Sea: an evaluation of their application as tracers of past nitrogen fixation. Biogeosciences 14(24): 5789-5804. https://doi.org/10.5194/bg-14-5789-2017
    Sorokin, D.Y.; Messina, E.; Smedile, F; Roman, P.; Sinninghe Damsté, J.S.; Ciordia, S.; Mena, M.C.; Ferrer, M.; Golyshin, P.N.; Kublanov, I.V.; Samarov, N.I.; Toshchakov, S.V.; La Cono, V.; Yakimov, M.M. (2017). Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats. ISME J. 11: 1245-1260. https://dx.doi.org/10.1038/ismej.2016.203
    Stal, L. (2017). The effect of oxygen concentration and temperature on nitrogenase activity in the heterocystous cyanobacterium Fischerella sp. NPG Scientific Reports 7(1): 10. https://dx.doi.org/10.1038/s41598-017-05715-0
    Stal, L.J. (2017). Gregarious cyanobacteria. Environ. Microbiol. 19(6): 2105-2109. https://dx.doi.org/10.1111/1462-2920.13739
    Stal, L.J.; Bolhuis, H.; Cretoiu, M.S. (2017). Phototrophic Microbial Mats, in: Hallenbeck, P.C. Modern Topics in the Phototrophic Prokaryotes : environmental and applied aspects . pp. 295-321. https://dx.doi.org/10.1007%2F978-3-319-46261-5_9
    Tierney, J.E.; Sinninghe Damsté, J.S.; Pancost, R.D.; Sluijs, A.; Zachos, J.C. (2017). Eocene temperature gradients. Nature Geoscience 10(8): 538-539. https://dx.doi.org/10.1038/ngeo2997
    van Soelen, E.E.; Kim, J.-H.; Ventura Santos, R.; Dantas, E.L.; Vasconcelos de Almeida, F.; Pinheiro Pires, J.; Roddaz, M.; Sinninghe Damsté, J.S. (2017). A 30 Ma history of the Amazon River inferred from terrigenous sediments and organic matter on the Ceará Rise. Earth Planet. Sci. Lett. 474: 40-48. https://doi.org/10.1016/j.epsl.2017.06.025
    Vellekoop, J.; Holwerda, F.; Prámparo, M.B.; Willmott, V.; Schouten, S.; Cúneo, N.R.; Scasso, R.A.; Brinkhuis, H. (2017). Climate and sea-level changes across a shallow marine Cretaceous-Palaeogene boundary succession in Patagonia, Argentina. Palaeontology 60(4): 519-534. https://dx.doi.org/10.1111/pala.12297
    Villanueva, L.; Schouten, S.; Sinninghe Damsté, J.S. (2017). Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’. Environ. Microbiol. 19(1): 54-69. dx.doi.org/10.1111/1462-2920.13361
    Warden, L.; Moros, M.; Neumann, T.; Shennan, S.; Timpson, A.; Manning, K.; Sollai, M.; Wacker, L.; Perner, K.; Häusler, K.; Leipe, T.; Zillén, L.; Kotilainen, A.; Jansen, E.; Schneider, R.R.; Oeberst, R.; Arz, H.; Sinninghe Damste, J.S. (2017). Climate induced human demographic and cultural change in northern Europe during the mid-Holocene. NPG Scientific Reports 7(1): 15251. https://dx.doi.org/10.1038/s41598-017-14353-5
    Warden, L.A. (2017). Paleoenvironmental reconstructions in the Baltic Sea and Iberian margin : Assessment of GDGTs and long-chain alkenones in Holocene sedimentary records. PhD Thesis. NIOZ: Texel. 249 pp. https://hdl.handle.net/1874/348276
    Webb, A.E.; van Heuven, S.M.A.C.; de Bakker, D.M.; van Duyl, F.C.; Reichart, G.-J.; de Nooijer, L.J. (2017). Combined Effects of Experimental Acidification and Eutrophication on Reef Sponge Bioerosion Rates. Front. Mar. Sci. 4: 311. https://doi.org/10.3389/fmars.2017.00311
    Weber, Y.; Sinninghe Damsté, J.S.; Hopmans, E.C.; Lehmann, M.F.; Niemann, H. (2017). Incomplete recovery of intact polar glycerol dialkyl glycerol tetraethers from lacustrine suspended biomass. Limnol. Oceanogr., Methods 15(9): 782–793. https://dx.doi.org/10.1002/lom3.10198
    Weiss, G.M.; Pfannerstill, E.Y.; Schouten, S.; Sinninghe Damsté, J.S.; van der Meer, M.T.J. (2017). Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi. Biogeosciences 14(24): 5693-5704. https://dx.doi.org/10.5194/bg-14-5693-2017
  • 2016
    Bale, N.J.; Hopmans, E.C.; Schoon, P.; de Kluijver, A.; Downing, J.A.; Middelburg, J.J.; Sinninghe Damsté, J.S.; Schouten, S. (2016). Impact of trophic state on the distribution of intact polar lipids in surface waters of lakes. Limnol. Oceanogr. 61(3): 1065–1077. dx.doi.org/10.1002/lno.10274
    Baltar, F.; Lundin, D.; Palovaara, J.; Lekunberri, I.; Reinthaler, T.; Herndl, G.; Pinhassi, J. (2016). Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic. Front. Microbiol. 7: 1670. dx.doi.org/10.3389/fmicb.2016.01670
    Bayer, B.; Vojvoda, J.; Offre, P.; Alves, R.J.E.; Elisabeth, N.H.; Garcia, J.A.L.; Volland, J.-M.; Srivastava, A.; Schleper, C.; Herndl, G. (2016). Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation. ISME J. 10: 1051-1063. dx.doi.org/10.1038/ismej.2015.200
    Bochdansky, A.B.; Clouse, M.A.; Herndl, G. (2016). Dragon kings of the deep sea: marine particles deviate markedly from the common number-size spectrum. NPG Scientific Reports 6(22633): 7 pp. http://dx.doi.org/10.1038/srep22633
    Bolhuis, H.; Cretoiu, M.S. (2016). What is so special about marine microorganisms? Introduction to the marine microbiome - from diversity to biotechnological potential, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 3-20. dx.doi.org/10.1007/978-3-319-33000-6_1
    Booij, K.; Robinson, C.D.; Burgess, R.M.; Mayer, P.; Roberts, C.A.; Ahrens, L.; Allan, I.J.; Brant, J.; Jones, L.; Kraus, U.R.; Larsen, M.M.; Lepom, P.; Petersen, J.; Pröfrock, D.; Roose, P.; Schäfer, S.; Smedes, F.; Tixier, C.; Vorkamp, K.; Whitehouse, P. (2016). Passive sampling in regulatory chemical monitoring of nonpolar organic compounds in the aquatic environment. Environ. Sci. Technol. 50(1): 3-17. dx.doi.org/10.1021/acs.est.5b04050
    Brussaard, C.P.D.; Baudoux, A.-C.; Rodríguez-Valera, F. (2016). Marine viruses, in: Stal, L.J. et al. (Ed.) The marine microbiome. An untapped source of biodiversity and biotechnological potential. pp. 155-183. dx.doi.org/10.1007/978-3-319-33000-6_5
    Brussaard, C.P.D.; Bidle, K.D.; Pedrós-Alió, C.; Legrand, C. (2016). The interactive microbial ocean. Nature Microbiology 2: 16255. dx.doi.org/10.1038/nmicrobiol.2016.255
    Brussaard, C.P.D.; Peperzak, L.; Beggah, S.; Wick, L.Y.; Wuerz, B.; Weber, J.; Arey, J.S.; Van der Burg, B.; Jonas, A.; Huisman, J.; van der Meer, J.R. (2016). Immediate ecotoxicological effects of short-lived oil spills on marine biota. Nature Comm. 7(11206): 11 pp. dx.doi.org/10.1038/ncomms11206
    Buckles, L.K.; Verschuren, D.; Weijers, J.W.H.; Cocquyt, C.; Blaauw, M.; Sinninghe Damsté, J.S. (2016). Interannual and (multi-)decadal variability in the sedimentary BIT index of Lake Challa, East Africa, over the past 2200 years: assessment of the precipitation proxy. Clim. Past 12: 1243-1262. dx.doi.org/10.5194/cp-12-1243-2016
    Burson, A.; Stomp, M.; Akil, L.; Brussaard, C.P.D.; Huisman, J. (2016). Unbalanced reduction of nutrient loads has created an offshore gradient from phosphorus to nitrogen limitation in the North Sea. Limnol. Oceanogr. 61(3): 869–888. dx.doi.org/10.1002/lno.10257
    Castañeda, I.S; Caley, T.; Dupont, L.; Kim, J.-H.; Malaizé, B.; Schouten, S. (2016). Middle to Late Pleistocene vegetation and climate change insubtropical southern East Africa. Earth Planet. Sci. Lett. 450: 306–316. dx.doi.org/10.1016/j.epsl.2016.06.049
    Castañeda, I.S; Schouten, S.; Paetzold, J.; Lucassen, F; Kasemann, S.; Kuhlmann, H.; Schefuß, E. (2016). Hydroclimate variability in the Nile River Basin during the past 28,000 years. Earth Planet. Sci. Lett. 438: 47-56. dx.doi.org/10.1016/j.epsl.2015.12.014
    Courtens, E.N.P.; Spieck, E.; Vilchez-Vargas, R.; Bodé, S.; Boeckx, P.; Schouten, S.; Jáuregui, R.; Pieper, D.H.; Vlaeminck, S.E.; Boon, N. (2016). A robust nitrifying community in a bioreactor at 50°C opens up the path for thermophilic nitrogen removal. ISME J. 10: 2293–2303. https://dx.doi.org/10.1038/ismej.2016.8
    Darling, K.F.; Schweizer, M.; Knudsen, K.L.; Evans, K.M.; Bird, C.; Roberts, A.; Filipsson, H.L.; Kim, J.-H; Gudmundsson, G.; Wade, C.M.; Sayer, M.D.J.; Austin, W.E.N. (2016). The genetic diversity, phylogeography and morphology of Elphidiidae (Foraminifera) in the Northeast Atlantic. Mar. Micropaleontol. 129: 1-23. dx.doi.org/10.1016/j.marmicro.2016.09.001
    de Bakker, D.M.; Meesters, E.H.; Bak, R.P.M.; Nieuwland, G.; van Duyl, F.C. (2016). Long-term Shifts in Coral Communities On Shallow to Deep Reef Slopes of Curaçao and Bonaire: Are There Any Winners? Front. Mar. Sci. 3: 247. https://dx.doi.org/10.3389/fmars.2016.00247
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    Frank, A.H.; Pontiller, B.; Herndl, G.; Reinthaler, T. (2016). Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean . Aquat. Microb. Ecol. 77: 99-110. dx.doi.org/10.3354/ame01792
    Glasl, B.; Herndl, G.; Frade, P.R. (2016). The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance. ISME J. 10: 2280–2292. dx.doi.org/10.1038/ismej.2016.9
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    Gumanao, G.S.; Saceda-Cardoz, M.M.; Mueller, B.; Bos, A.R. (2016). Length–weight and length–length relationships of 139 Indo-Pacific fish species (Teleostei) from the Davao Gulf, Philippines. J. Appl. Ichthyol. 377: 377–385. dx.doi.org/10.1111/jai.12993
    Heinzelmann, S.M.; Bale, N.J.; Villanueva, L.; Sinke-Schoen, D.; Philippart, C.J.M.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2016). Seasonal changes in the D  /  H ratio of fatty acids of pelagic microorganisms in the coastal North Sea. Biogeosciences 13: 5527-5539. https://dx.doi.org/10.5194/bg-13-5527-2016
    Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2016). The effect of improved chromatography on GDGT-based palaeoproxies. Org. Geochem. 93: 1-6. dx.doi.org/10.1016/j.orggeochem.2015.12.006
    Ismail, A.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L.J.; Cretoiu, M.S.; El Bour, M. (2016). Antimicrobial Activities of Bacteria Associated with the Brown Alga Padina pavonica. Front. Microbiol. 7: 1072. dx.doi.org/10.3389/fmicb.2016.01072
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    Kandiano, E.S.; Van der Meer, M.T.J.; Bauch, H.A.; Helmke, J.; Sinninghe Damsté, J.S.; Schouten, S. (2016). A cold and fresh ocean surface in the Nordic Seas during MIS 11: Significance for the future ocean. Geophys. Res. Lett. 43(20): 10,929–10,937. https://dx.doi.org/10.1002/2016GL070294
    Kim, J.-H.; Villanueva, L.; Zell, C.; Sinninghe Damsté, J.S. (2016). Biological source and provenance of deep-water derived isoprenoid tetraether lipids along the Portuguese continental margin. Geochim. Cosmochim. Acta 172: 177–204. dx.doi.org/10.1016/j.gca.2015.09.010
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    Kulichevskaya, I.S.; Ivanova, A.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2016). Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov. Int. J. Syst. Evol. Microbiol. 66: 837-844. dx.doi.org/ 10.1099/ijsem.0.000799
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    Levy, R.; Schouten, S.; SMS Sci Team (2016). Antarctic ice sheet sensitivity to atmospheric CO2 variations in the early to mid-Miocene. Proc. Natl. Acad. Sci. U.S.A. 113(13): 3453–3458. dx.doi.org/10.1073/pnas.1516030113
    Lipsewers, Y.A.; Hopmans, E.C.; Meysman, F.J.R.; Sinninghe Damsté, J.S.; Villanueva, L. (2016). Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline Lake Grevelingen. Front. Microbiol. 7: 1661. https://dx.doi.org/10.3389/fmicb.2016.01661
    Lüke, C.; Speth, D.R.; Kox, M.A.R.; Villanueva, L.; Jetten, M.S.M. (2016). Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone. PeerJ 4: e1924. dx.doi.org/10.7717/peerj.1924
    Maat, D.; Bale, N.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; Brussaard, C.P.D. (2016). Increasing P limitation and viral infection impact lipid remodeling of the picophytoplankter Micromonas pusilla. Biogeosciences 13(5): 1667-1676. http://dx.doi.org/10.5194/bg-13-1667-2016
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    Maat, D.S.; Brussaard, C.P.D. (2016). Both phosphorus- and nitrogen limitation constrain viral proliferation in marine phytoplankton. Aquat. Microb. Ecol. 77(2): 87-97. dx.doi.org/10.3354/ame01791
    Maat, D.S.; de Blok, R.; Brussaard, C.P.D. (2016). Combined Phosphorus Limitation and Light Stress Prevent Viral Proliferation in the Phytoplankton Species Phaeocystis globosa, but Not in Micromonas pusilla. Front. Mar. Sci. 3: 160. dx.doi.org/10.3389/fmars.2016.00160
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    Mao, J.; Nierop, K.G.J.; Rietkerk, M.; Sinninghe Damsté, J.S.; Dekker, S.C. (2016). The influence of vegetation on soil water repellency-markers and soil hydrophobicity. Sci. Total Environ. 566-567: 608-620. dx.doi.org/10.1016/j.scitotenv.2016.05.077
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    Visser, P.M.; Verspagen, J.M.H.; Sandrini, G.; Stal, L.J.; Matthijs, H.C.P.; Davis, T.W.; Pearl, H.W.; Huisman, J. (2016). How rising CO2 and global warming may stimulate harmful cyanobacterial blooms. Harmful Algae 54: 145–159. dx.doi.org/10.1016/j.hal.2015.12.006
    Warden, L.; Kim, J.-H; Zell, C.; Vis, G.-J.; de Stigter, H.C.; Bonnin, J.; Sinninghe Damste, J.S. (2016). Examining the provenance of branched GDGTs in the Tagus River drainage basin and its outflow into the Atlantic Ocean over the Holocene to determine their usefulness for paleoclimate applications. Biogeosciences 13: 5719-5738. dx.doi.org/10.5194/bg-13-5719-2016
    Warden, L.; Van der Meer, M.T.J.; Moros, M.; Sinninghe Damsté, J.S. (2016). Sedimentary alkenone distributions reflect salinity changes in the Baltic Sea over the Holocene. Org. Geochem. 102: 30–44. dx.doi.org/10.1016/j.orggeochem.2016.09.007
    Webb, A.L.; Leedham-Elvidge, E.; Hughes, C.; Hopkins, F.; Malin, G.; Bach, L.T.; Schulz, K.; Crawfurd, K.; Brussaard, C.P.D.; Stuhr, A.; Riebesell, U.; Liss, P.S. (2016). Effect of ocean acidification and elevated fCO2 on trace gas production by a Baltic Sea summer phytoplankton community. Biogeosciences 13: 4595–4613. https://dx.doi.org/10.5194/bg-13-4595-2016
    Wigington, C.H.; Sonderegger, D.; Brussaard, C.P.D.; Buchan, A.; Finke, J.F.; Fuhrman, J.A.; Lennon, J.T.; Middelboe, M.; Suttle, C.A.; Stock, C.; Wilson, W.H.; Wommack, K.E.; Wilhelm, S.W.; Weitz, J.S. (2016). Re-examination of the relationship between marine virus and microbial cell abundances. Nature Microbiology 1: 15024. https://dx.doi.org/10.1038/NMICROBIOL.2015.24
  • 2015
    Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean". Science (Wash.) 350(6267): 1483-1483. http://dx.doi.org/10.1126/science.aac7249
    Arrieta, J.M.; Mayol, E.; Hansman, R.L.; Herndl, G.J.; Dittmar, T.; Duarte, C.M. (2015). Dilution limits dissolved organic carbon utilization in the deep ocean. Science (Wash.) 348(6232): 331-333. hdl.handle.net/10.1126/science.1258955
    Bale, N.; Hopmans, E.C.; Zell, C.; Sobrinho, R.; Kim, J.H.; Sinninghe Damsté, J.S.; Villareal, T.A.; Schouten, S. (2015). Long chain glycolipids with pentose head groups as biomarkers for marine endosymbiotic heterocystous cyanobacteria. Org. Geochem. 81: 1-7. https://dx.doi.org/10.1016/j.orggeochem.2015.01.004
    Bale, N.J.; Maat, D.S.; Hopmans, E.C.; Mets, A.; Sinninghe Damsté, J.S.; Brussaard, C.P.D.; Schouten, S. (2015). Fatty acid dynamics during viral infection of Phaeocystis globosa. Aquat. Microb. Ecol. 74: 85–94. dx.doi.org/10.3354/ame01730
    Blanchet, C.; Contoux, C.; Leduc, G. (2015). Runoff and precipitation dynamics in the Blue and White Nile catchments during the mid-Holocene: A data-model comparison. Quat. Sci. Rev. 130: 222–230. dx.doi.org/10.1016/j.quascirev.2015.07.014
    Bonin, P.; Vieira, C.; Grimaud, R.; Militon, C.; Cuny, P.; Lima, O.; Guasco, S.; Brussaard, C.P.D.; Michotey, V. (2015). Substrates specialization in lipid compounds and hydrocarbons of Marinobacter genus. Environm. Sc. & Poll. Res. 22: 15347-15359. dx.doi.org/10.1007/s11356-014-4009-y
    Booij, K.; Tucca, F. (2015). Passive samplers of hydrophobic organic chemicals reach equilibrium faster in the laboratory than in the field. Mar. Pollut. Bull. 98(1-2): 365-367. dx.doi.org/10.1016/j.marpolbul.2015.07.007
    Bottini, C.; Erba, E.; Tiraboschi, D.; Jenkyns, H.C.; Schouten, S.; Sinninghe Damsté, J.S. (2015). Climate variability and ocean fertility during the Aptian Stage. Clim. Past 11: 383-402. dx.doi.org/10.5194/cp-11-383-2015
    Brauer, V.S.; Stomp, M.; Bouvier, T.; Fouilland, E.; Leboulanger, C.; Confurius-Guns, V.; Weissing, F.J.; Stal, L.J.; Huisman, J. (2015). Competition and facilitation between the marine nitrogen-fixing cyanobacterium Cyanothece and its associated bacterial community. Front. Microbiol. 5: 795. dx.doi.org/10.3389/fmicb.2014.00795
    Brocke, H.J.; Wenzhoefer, F.; de Beer, D.; Mueller, B.; van Duyl, F.C.; Nugues, M.M. (2015). High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem. NPG Scientific Reports 5(8852): 7 pp. hdl.handle.net/10.1038/srep08852
    Carreira , C. (2015). Microscale spatial distributions of microbes in marine intertidal sediments andphotosynthetic microbial mats. PhD Thesis. UvA: Amsterdam. 152 pp. hdl.handle.net/11245/1.471593
    Carreira, C; Piel, T; Staal, M.; Stuut, J.-B; Middelboe, M.; Brussaard, C.P.D. (2015). Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats. SpringerPlus 4: 239. dx.doi.org/10.1186/s40064-015-0977-8
    Carreira, C; Staal, M.; Falkoski, D.; de Vries, R.P.; Middelboe, M.; Brussaard, C.P.D. (2015). Disruption of photoautotrophic intertidal mats by filamentous fungi. Environ. Microbiol. 17(8): 2910-2921. dx.doi.org/ 10.1111/1462-2920.12835
    Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Counting viruses and bacteria in photosynthetic microbial mats. Appl. Environ. Microbiol. 81(6): 2149-2155. dx.doi.org/10.1128/AEM.02863-14
    Carreira, C; Staal, M.; Middelboe, M.; Brussaard, C.P.D. (2015). Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms. Limnol. Oceanogr., Methods 13(4): 169–177. dx.doi.org/10.1002/lom3.10016
    Cretoiu, M.S.; Berini, F; Kielak, A.M.; Marinelli, F.; Van Elsas, J.D. (2015). A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil. Appl. Microbiol. Biotechnol. 99(19): 8199-8215. dx.doi.org/10.1007/s00253-015-6639-5
    de Jonge, C. (2015). Sources and sinks of branched tetraether lipids and bacteriohopanepolyols in a major river system (Yenisei River – Kara Sea: Implications for their application as geochemical tracers. PhD Thesis. Universiteit Utrecht (UU): Utrecht. ISBN 978-94-6203-808-0. 254 pp. hdl.handle.net/1874/314974
    De Jonge, C.; Stadnitskaia, A.; Fedotov, A.; Sinninghe Damsté, J.S. (2015). Impact of riverine suspended particulate matter on the branched glycerol dialkyl glycerol tetraether composition of lakes: The outflow of the Selenga River in Lake Baikal (Russia). Org. Geochem. 83-84: 241-252. dx.doi.org/10.1016/j.orggeochem.2015.04.004
    De Jonge, C.; Stadnitskaia, A.; Hopmans, E.C.; Cherkashov, G.; Fedotov, A.; Streletskaya, I.D.; Vasiliev, A.A.; Sinninghe Damsté, J.S. (2015). Drastic changes in the distribution of branched tetraether lipids in suspended matter and sediments from the Yenisei River and Kara Sea (Siberia): Implications for the use of brGDGT-based proxies in coastal marine sediment. Geochim. Cosmochim. Acta 165: 200-225. dx.doi.org/10.1016/j.gca.2015.05.044
    Dessandier, P.-A.; Bonnin, J.; Kim, J.-H.; Bichona, S.; Grémare, A.; Deflandre, B.; de Stigter, H.; Malaizé, B. (2015). Lateral and vertical distributions of living benthic foraminifera off the Douro River (western Iberian margin): Impact of the organic matter quality. Mar. Micropaleontol. 120: 31–45. dx.doi.org/10.1016/j.marmicro.2015.09.002
    Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat. Front. Microbiol. 6: 1367. dx.doi.org/10.3389/fmicb.2015.01367
    Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Drivers of the dynamics of diazotrophs and denitrifiers in North Sea bottom waters and sediments. Front. Microbiol. 6: 738. dx.doi.org/10.3389/fmicb.2015.00738
    Fan, H.; Bolhuis, H.; Stal, L.J. (2015). Denitrification and the denitrifier community in coastal microbial mats. FEMS Microbiol. Ecol. 91(3): 1-11. dx.doi.org/10.1093/femsec/fiu033
    Grosse, J.; Van Breugel, P.; Boschker, H.T.S. (2015). Tracing carbon fixation in phytoplankton—compound specific and total 13C incorporation rates. Limnol. Oceanogr., Methods 13(6): 288-302. dx.doi.org/10.1002/lom3.10025
    Günther, F.; Witt, R.; Schouten, S.; Mausbacher, R.; Daut, G.; Zhu, L.; Xu, B.Q.; Yao, T.; Gleixner, G. (2015). Quaternary ecological responses and impacts of the Indian Ocean Summer Monsoon at Nam Co, Southern Tibetan Plateau. Quat. Sci. Rev. 112: 66-77. dx.doi.org/10.1016/j.quascirev.2015.01.023
    Hansman, R.L.; Dittmar, T.; Herndl, G.J. (2015). Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean. Mar. Chem. 177: 288–297. dx.doi.org/10.1016/j.marchem.2015.06.001
    Heinzelmann, S.M. (2015). Metabolism of microbial communities in the environment : A compound-specific stable hydrogen isotope approach. PhD Thesis. Utrecht University: Utrecht. ISBN 9789462039599. 187 pp. hdl.handle.net/1874/328058
    Heinzelmann, S.M.; Chivall, D.; M'boule, D.; Sinke-Schoen, D.; Villanueva, L.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2015). Comparison of the effect of salinity on the D/H ratio of fatty acids of heterotrophic and photoautotrophic microorganisms. FEMS Microbiol. Lett. 362(10). dx.doi.org/10.1093/femsle/fnv065
    Heinzelmann, S.M.; Villanueva, L. ; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; Van der Meer, M.T.J. (2015). Impact of metabolism and growth phase on the hydrogen isotopic composition of microbial fatty acids. Front. Microbiol. 6: 408. dx.doi.org/10.3389/fmicb.2015.00408
    Javaheri, N.; Dries, R.; Burson, A.; Stal, L.J.; Sloot, P.M.A.; Kaandorp, J.A. (2015). Temperature affects the silicate morphology in a diatom. NPG Scientific Reports 5: 11652. hdl.handle.net/10.1038/srep11652
    Jean, M.R.N.; Gonzalez-Rizzo, S.; Gauffre-Autelin, P.; Lengger, S.K.; Schouten, S.; Gros, O. (2015). Two New Beggiatoa Species Inhabiting Marine Mangrove Sediments in the Caribbean. PLoS One 10(2): e0117832. dx.doi.org/10.1371/journal.pone.0117832
    Kaiser, J.; Schouten, S.; Kilian, R.; Arz, H.W.; Lamy, F.; Sinninghe Damsté, J.S. (2015). Isoprenoid and branched GDGT-based proxies for surface sediments from marine, fjord and lake environments in Chile. Org. Geochem. 89-90: 117-127. dx.doi.org/10.1016/j.orggeochem.2015.10.007
    Kasper, S. (2015). Reconstruction of past changes in ocean salinity - a compound specific stable hydrogen isotope approach. PhD Thesis. Universiteit Utrecht (UU): Utrecht. ISBN 978-94-6203-839-4. 140 pp. hdl.handle.net/1874/313601
    Kasper, S.; van der Meer, M.T.J.; Castañeda, I.S; Tjallingii, R.; Brummer, G.J.A.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Testing the alkenone D/H ratio as a paleo indicator of sea surface salinity in a coastal ocean margin (Mozambique Channel). Org. Geochem. 78: 62-68. dx.doi.org/10.1016/j.orggeochem.2014.10.011
    Kaur, G.; Mountain, B.W.; Stott, M.; Hopmans, E.C.; Pancrost, R.J. (2015). Temperature and pH control on lipid composition of silica sinters from diverse hot springs in the Taupo Volcanic Zone, New Zealand. Extremophiles 19: 327-344. dx.doi.org/10.1007/s00792-014-0719-9
    Kim, J.-H.; Ludwig, W.; Buscail, R.; Dorhout, D.; Sinninghe Damsté, J.S. (2015). Tracing tetraether lipids from source to sink in the Rhône River system (NW Mediterranean). Front. Earth Sci. 3: 22. https://dx.doi.org/10.3389/feart.2015.00022
    Kim, J.H.; Schouten, S.; Rodrigo-Gámiz, M.; Rampen, S.W.; Marino, G.; Huguet, C.; Helmke, P.; Buscail, R.; Hopmans, E.C.; Pross, J.; Sangiorgi, F.; Middelburg, J.; Sinninghe Damsté, J.S. (2015). Influence of deep-water derived isoprenoid tetraether lipids on the TEX h 86 paleothermometer in the Mediterranean Sea. Geochim. Cosmochim. Acta 150: 125–141. dx.doi.org/10.1016/j.gca.2014.11.017
    Koopmans, M.; van Rijswijk, P.; Boschker, H.T.S.; Houtekamer, M.; Martens, D.; Wijffels, R.H. (2015). Seasonal Variation of Fatty Acids and Stable Carbon Isotopes in Sponges as Indicators for Nutrition: Biomarkers in Sponges Identified. Mar. Biotechnol. 17(1): 43-54. dx.doi.org/10.1007/s10126-014-9594-8
    Kulichevskaya, I.S.; Ivanova, A.; Detkova, E.N.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2015). Planctomicrobium piriforme gen. nov., sp. nov., a stalked planctomycete from a littoral wetland of a boreal lake. Int. J. Syst. Evol. Microbiol. 65(5): 1659-1665. dx.doi.org/10.1099/ijs.0.000154
    Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2015). Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach. Est., Coast. and Shelf Sci. 165: 117-127. https://dx.doi.org/10.1016/j.ecss.2015.09.010
    Leopold, M.F.; Begeman, L.; van Bleijswijk, J.D.L.; IJsseldijk, L.L.; Witte, H.; Gröne, A. (2015). Exposing the grey seal as a major predator of harbour porpoises. Proc. R. Soc. Lond. (Biol. Sci.) 282(1802): 20142429. dx.doi.org/10.1098/rspb.2014.2429
    Lønborg, C.; Yokokawa, T.; Herndl, G.J.; Alvarez-Salgado, X.A. (2015). Production and degradation of fluorescent dissolved organic matter in surface waters of the eastern north Atlantic ocean. Deep-Sea Res. Pt. A: Oceanogr. Res. Pap.A: Oceanogr. Res. Pap 96: 28–37. dx.doi.org/10.1016/j.dsr.2014.11.001
    Malits, A.; Cattaneo, R.; Sintes, E.; Gasol, J.M.; Herndl, G.J.; Weinbauer, M.G. (2015). Potential impacts of black carbon on the marine microbial community. Aquat. Microb. Ecol. 75: 27-42. dx.doi.org/10.3354/ame01742
    Martínez Martínez, J.; Boere, A.; Gilg, I.; van Lent, J.W.M.; Witte, H.; van Bleijswijk, J.D.L.; Brussaard, C.D.P. (2015). New lipid envelope-containing dsDNA virus isolates infecting Micromonas pusilla reveal a separate phylogenetic group. Aquat. Microb. Ecol. 74: 17-28. dx.doi.org/10.3354/ame01723
    Moerdijk-Poortvliet, T.C.W.; Schierbeek, H.; Houtekamer, M.; van Engeland, T.; Derrien, D.; Stal, L.J.; Boschker, H.T.S. (2015). Comparison of gas chromatography/isotope ratio mass spectrometry and liquid chromatography/isotope ratio mass spectrometry for carbon stable-isotope analysis of carbohydrates. Rapid Comm. Mass Spectrom. 29: 1205-1214. dx.doi.org/10.1002/rcm.7217
    Mojica, K.D.A. (2015). General discussion, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 225-232
    Mojica, K.D.A. (2015). Summary, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 235-238
    Mojica, K.D.A. (2015). Samenvatting, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 239-242
    Mojica, K.D.A. (2015). Acknowledgements, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 246-247
    Mojica, K.D.A. (2015). Viral lysis of marine microbes in relation to vertical stratification. PhD Thesis. Universiteit van Amsterdam: Amsterdam. ISBN 978-94-91407-20-8. 247 pp. hdl.handle.net/11245/1.487499
    Mojica, K.D.A. (2015). General Introduction, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 9-25
    Mojica, K.D.A.; Brussaard, C.P.D. (2015). Factors affecting virus dynamics and microbial host-virus interactions in marine environments, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 27-72
    Mojica, K.D.A.; Brussaard, C.P.D. (2015). Heterotrophic prokaryotic growth and loss rates along a latitudinal gradient in the Northeast Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 173-204
    Mojica, K.D.A.; Brussaard, C.P.D. (2015). The viral shunt in a stratified Northeast Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 207-222
    Mojica, K.D.A.; Evans, C.; Brussaard, C.P.D. (2015). Flow cytometric enumeration of marine viral populations at low abundances, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 159-171
    Mojica, K.D.A.; Huisman, J.; Wilhelm, S.W.; Brussaard, C.P.D. (2015). Latitudinal variation in virus-induced mortality of phytoplankton across the North Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 119-156
    Mojica, K.D.A.; van de Poll, W.H.; Kehoe, M.; Huisman, J.; Timmermans, K.R.; Buma, A.G.J.; Van der Woerd, H.J.; Hahn-Woernle, L.; Dijkstra, H.A.; Brussaard, C.P.D. (2015). Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean, in: Mojica, K.D.A. Viral lysis of marine microbes in relation to vertical stratification. pp. 75-116
    Mojica, K.D.A.; van de Poll, W.H.; Kehoe, M.; Huisman, J.; Timmermans, K.R.; Buma, A.G.J.; Van der Woerd, H.J.; Hahn-Woernle, L.; Dijkstra, H.A.; Brussaard, C.P.D. (2015). Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean. Limnol. Oceanogr. 60(5): 1498–1521. https://dx.doi.org/10.1002/lno.10113
    Mollenhauer, G.; Basse, A.; Kim, J.H.; Sinninghe Damsté, J.S.; Fischer, G. (2015). A four-year record of UKk'37- and TEX86-derived sea surface temperature estimates from sinking particles in the filamentous upwelling region off Cape Blanc, Mauritania. Deep-Sea Res. Pt. A: Oceanogr. Res. Pap.A: Oceanogr. Res. Pap 97: 67–79. dx.doi.org/10.1016/j.dsr.2014.11.015
    Moore, E.K.; Hopmans, E.C.; Rijpstra, W.I.C.; Sánchez-Andrea, I.; Villanueva, L.; Wienk, H.; Schoutsen, F; Stams, A.J.M.; Sinninghe Damsté, J.S. (2015). Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans. Front. Microbiol. 6: 637. dx.doi.org/10.3389/fmicb.2015.00637
    Moore, E.K.; Villanueva, L.; Hopmans, E.C.; Rijpstra, W.I.C.; Mets, A.; Dedysh, S.N.; Sinninghe Damsté, J.S. (2015). Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands. Appl. Environ. Microbiol. 81(18): 6333-6344. dx.doi.org/10.1128/AEM.00324-15
    Mueller, B. (2015). Shedding light on DOC release by benthic primary producers and its consumption by bioeroding sponges. Utrecht Studies in Earth Sciences, 94. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-407-8. 135 pp. http://hdl.handle.net/1874/327650
    Nieto-Moreno, V.; Martínez-Ruiz, F.; Gallego-Torres, D.; Giralt, S.; García-Orellana, J.; Masque, P.; Sinninghe Damsté, J.S.; Ortega-Huertas, M. (2015). Palaeoclimate and palaeoceanographic conditions in the westernmost Mediterranean over the last millennium: an integrated organic and inorganic approach. J. Geol. Soc. Lond. 172(2): 264-271. dx.doi.org/10.1144/jgs2013-105
    Pascal, P.-Y.; Bellemare, C.; Sterrer, W.; Boschker, H.T.S.; Gonzalez-Rizzo, S.; Gros, O. (2015). Diet of Haplognathia ruberrima (Gnathostomulida) in a Caribbean marine mangrove. Mar. Ecol. (Berl.) 36: 246-257. dx.doi.org/10.1111/maec.12296
    Petrick, B.F.; McClymont, E.L.; Marret, F.; van der Meer, M.T.J. (2015). Changing surface water conditions for the last 500ka in the Southeast Atlantic: Implications for variable influences of Agulhas leakage and Benguela upwelling. Paleoceanography 30(9): 1153–1167. dx.doi.org/10.1002/2015PA002787
    Poulton, S.W.; Henkel, S.; März, C.; Urquhart, H.; Flögel, S.; Kasten, S.; Sinninghe Damsté, J.S.; Wagner, Th. (2015). A continental-weathering control on orbitally driven redox-nutrient cycling during Cretaceous Oceanic Anoxic Event 2. Geology (Boulder Colo.) 43(11): 963–966. dx.doi.org/10.1130/G36837.1
    Quemin, E.R. J.; Pietilä, M.K.; Oksanen, H.M.; Forterre, P.; Rijpstra, W.I.C.; Schouten, S.; Bamford, D,H,; Prangishvili, D.; Krupovica, M. (2015). Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids. J. Virol. 89(22): 11681-11691. dx.doi.org/10.1128/JVI.02270-15
    Rodrigo-Gámiz, M.; Rampen, S.W.; de Haas, H.; Baas, M.; Schouten, S.; Sinninghe Damsté, J.S. (2015). Constraints on the applicability of the organic temperature proxies Uk'37, TEX86 and LDI in the subpolar region around Iceland. Biogeosciences 12(22). dx.doi.org/10.5194/bg-12-6573-2015
    Romero, O.E.; Crosta, X.; Kim, J.-H.; Pichevin, L.; Crespin, J. (2015). Rapid longitudinal migrations of the filament front off Namibia (SE Atlantic) during the past 70 kyr. Global Planet. Change 125: 1-12. dx.doi.org/10.1016/j.gloplacha.2014.12.001
    Romero, O.E.; Kim, J.-H.; Bárcena, M.A.; Hall, I.R.; Zahn, R.; Schneider, R. (2015). High-latitude forcing of diatom productivity in the southern Agulhas Plateauduring the past 350kyr. Paleoceanography 30(2): 118-132. dx.doi.org/10.1002/2014PA002636
    Schoon, P.L.; Heilmann-Clausen, C.; Schultz, B.P.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Warming and environmental changes in the eastern North Sea Basin during the Palaeocene–Eocene Thermal Maximum as revealed by biomarker lipids. Org. Geochem. 78: 79–88. dx.doi.org/10.1016/j.orggeochem.2014.11.003
    Simon, M.H.; Gong, X.; Hall, I.R.; Ziegler, M.; Barker, S.; Knorr, G.; van der Meer, M.T.J.; Kasper, S.; Schouten, S. (2015). Salt exchange in the Indian-Atlantic Ocean Gateway since the Last Glacial Maximum: A compensating effect between Agulhas Current changes and salinity variations? Paleoceanography 30(10): 1318–1327. dx.doi.org/10.1002/2015PA002842
    Sintes, E.; Ouillon, N.; Herndl, G.J. (2015). Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean. Mol. Ecol. 24: 4931–4942 . dx.doi.org/10.1111/mec.13365
    Sollai, M.; Hopmans, E.C.; Schouten, S.; Keil, R.G.; Sinninghe Damsté, J.S. (2015). Intact polar lipids of Thaumarchaeota and anammox bacteria as indicators of N cycling in the eastern tropical North Pacific oxygen-deficient zone. Biogeosciences 12: 4725-4737. dx.doi.org/10.5194/bg-12-4725-2015
    Sorokin, D.Y.; Abbas, B.; Merkel, A.Y; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Sukhacheva, M.V; van Loosdrecht, M.C.M. (2015). Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes. Int. J. Syst. Evol. Microbiol. 65: 3739-3745. dx.doi.org/10.1099/ijsem.0.000488
    Steger, K.; Premke, K.; Gudasz, C.; Boschker, H.T.S.; Tranvik, L.J. (2015). Comparative study on bacterial carbon sources in lake sediments: the role of methanotrophy. Aquat. Microb. Ecol. 76: 39–47. dx.doi.org/10.3354/ame01766
    Stehouwer, P.P.; Buma, A.; Peperzak, L. (2015). A comparison of six different ballast water treatment systems based on UV radiation, electrochlorination and chlorine dioxide. Environ. Technol. 36(16): 2094-2104. dx.doi.org/10.1080/09593330.2015.1021858
    Svensson, E.; Schouten, S.; Stam, A.; Middelburg, J.J.; Sinninghe Damsté, J.S. (2015). Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids. Rapid Comm. Mass Spectrom. 29(23): 2263–2271. dx.doi.org/10.1002/rcm.7393
    van Bleijswijk, J.D.L.; Whalen, C.; Duineveld, G.C.A.; Lavaleye, M.S.S.; Witte, H.J.; Mienis, F (2015). Microbial assemblages on a cold-water coral mound at the SE Rockall Bank (NE Atlantic): interactions with hydrography and topography. Biogeosciences 12(14): 4493-4496. dx.doi.org/10.5194/bg-12-4483-2015
    van de Poll, W.H.V.; Boute, P.G.; Rozema, P.D.; Buma, A.; Kulk, G.; Rijkenberg, M.J. (2015). Sea surface temperature control of taxon specific phytoplankton production along an oligotrophic gradient in the Mediterranean Sea. Mar. Chem. 177(Part 3): 536–544. dx.doi.org/10.1016/j.marchem.2015.08.005
    van der Meer, M.T.J.; Benthien, A.; French, K.L.; Epping, E.; Zondervan, I.; Reichart, G.J.; Bijma, J.; Sinninghe Damsté, J.S.; Schouten, S. (2015). Large effect of irradiance on hydrogen isotope fractionation of alkenones in Emiliania huxleyi. Geochim. Cosmochim. Acta 160: 16-24. dx.doi.org/10.1016/j.gca.2015.03.024
    van Helmond, N.A.G.M.; Sluijs, A.; Sinninghe Damsté, J.S.; Reichart, G.-J.; Voigt, S.; Erbacher, J.; Pross, J.; Brinkhuis, H. (2015). Freshwater discharge controlled deposition of Cenomanian–Turonian black shales on the NW European epicontinental shelf (Wunstorf, northern Germany). Clim. Past 11: 495-508. dx.doi.org/10.5194/cp-11-495-2015
    van Slooten, C.; Peperzak, L.; Buma, A.G.J. (2015). Assessment of didecyldimethylammonium chloride as a ballast water treatment method. Environ. Technol. 36(4): 435-449. hdl.handle.net/10.1080/09593330.2014.951401
    van Slooten, C.; Wijers, T,; Buma, A.G.J.; Peperzak, L. (2015). Development and testing of a rapid, sensitive ATP assay to detect living organisms in ballast water. J. Appl. Phycol. 27: 2299-2312. dx.doi.org/10.1007/s10811-014-0518-9
    Vasiliev, I.; Reichart, G.-J.; Grothe, A.; Sinninghe Damsté, J.S.; Krijgsman, W.; Sangiorgi, F.; Weijers, J.W.H; van Róij, L. (2015). Recurrent phases of drought in the upper Miocene of the Black Sea region. Palaeogeogr. Palaeoclimatol. Palaeoecol. 423: 18-31. dx.doi.org/10.1016/j.palaeo.2015.01.020
    Vasquez-Cardenas, D.; van de Vossenberg, J.; Polerecky, L.; Malkin, S.Y.; Schauer, R.; Hidalgo-Martinez, S.; Confurius-Guns, V.; Middelburg, J.J.; Meysman, F.J.R.; Boschker, H.T.S. (2015). Microbial carbon metabolism associated with electrogenic sulphur oxidation in coastal sediments. ISME J. 9(9): 1966-1978. dx.doi.org/10.1038/ismej.2015.10
    Vellekoop, J.; Smit, J.; van de Schootbrugge, B.; Weijers, J.W.; Galeotti, S.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2015). Palynological evidence for prolonged cooling along the Tunisian continental shelf following the K–Pg boundary impact. Palaeogeogr. Palaeoclimatol. Palaeoecol. 426: 216-228. dx.doi.org/10.1016/j.palaeo.2015.03.021
    Villanueva, L. ; Schouten, S.; Sinninghe Damsté, J.S. (2015). Depth-related distribution of a key gene of the tetraether lipid biosynthetic pathway in marine Thaumarchaeota. Environ. Microbiol. 17(10): 3527–3539. dx.doi.org/10.1111/1462-2920.12508
    Weber, Y.; De Jonge, C.; Rijpstra, W.I.C.; Hopmans, E.C.; Stadnitskaia, A.; Schubert, C.J.; Lehmann, M.F.; Sinninghe Damsté, J.S.; Niemann, H. (2015). Identification and carbon isotope composition of a novel branched GDGT isomer in lake sediments: Evidence for lacustrine branched GDGT production. Geochim. Cosmochim. Acta 154: 118-129. dx.doi.org/10.1016/j.gca.2015.01.032
    Zell, C.; Kim, J-H; Dorhout, D.; Baas, M.; Baas, M.; Sinninghe Damsté, J.S. (2015). Sources and distributions of branched tetraether lipids and crenarchaeol along the Portuguese continental margin: Implications for the BIT index. Cont. Shelf Res. 96: 34-44. dx.doi.org/10.1016/j.csr.2015.01.006
    Zenke, R.; von Gronau, S.; Bolhuis, H.; Gruska, M.; Pfeiffer, F; Oesterhelt, D. (2015). Fluorescence microscopy visualization of halomucin, a secreted 927 kDa protein surrounding Haloquadratum walsbyi cells. Front. Microbiol. 6: article 249. dx.doi.org/10.3389/fmicb.2015.00249
  • 2014
    Abouchami, W.; Galer, S.J.G.; de Baar, H.J.W.; Middag, R.; Vance, D.; Zhao, Y.; Klunder, M.; Mezger, K.; Feldmann, H.; Andreae, M.O. (2014). Biogeochemical cycling of cadmium isotopes in the Southern Ocean along the Zero Meridian. Geochim. Cosmochim. Acta 127: 348-367. dx.doi.org/10.1016/j.gca.2013.10.022
    Abril, G.; Martinez, J.M.; Artigas, L.F.; Moreira-Turcq, P.; Benedetti, M.F.; Vidal, L.; Meziane, T.; Kim, J.-H.; Bernardes, M.C.; Savoye, N.; Deborde, J.; Souza, E.L.; Alberic, P.; de Souza, M.F.L.; Roland, F. (2014). Amazon River carbon dioxide outgassing fuelled by wetlands. Nature (Lond.) 505(7483): 395-398. dx.doi.org/10.1038/nature12797
    Agawin, N.S.R.; Benavides, M.; Busquets, A.; Ferriol, P.; Stal, L.J.; Aristegui, J. (2014). Dominance of unicellular cyanobacteria in the diazotrophic community in the Atlantic Ocean. Limnol. Oceanogr. 59(2): 623-637. hdl.handle.net/10.4319/lo.2014.59.2.0623
    Ahmed, M.; Stal, L.; Hasnain, S. (2014). The morphology and bioactivity of the rice field cyanobacterium Leptolyngbya. Rev. Biol. Trop. 62(3): 1251-1260. dx.doi.org/10.15517/rbt.v62i3.8657
    Ahmed, M.; Stal, L.J.; Hasnain, S. (2014). Biofilm Formation and Indole-3-Acetic Acid Production by Two Rhizospheric Unicellular Cyanobacteria. J. Microbiol. Biotechnol. 24(8): 1015-1025. hdl.handle.net/10.4014/jmb.1310.10099
    Ahmed, M.; Wijnholds, A.; Stal, L.J.; Hasnain, S. (2014). Isolation, characterization and localization of extracellular polymeric substances from the cyanobacterium Arthrospira platensis strain MMG-9. Eur. J. Phycol. 49(2): 143-150. dx.doi.org/10.1080/09670262.2014.895048
    Bale, N.; Villanueva, L.; Fan, H.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S.; Stal, L.J. (2014). Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea. FEMS Microbiol. Ecol. 89(1): 99–110. hdl.handle.net/10.1111/1574-6941.12338
    Bauersachs, T.; Schouten, S.; Schwark, L. (2014). Characterization of the sedimentary organic matter preserved in Messel oil shale by bulk geochemistry and stable isotopes. Palaeogeogr. Palaeoclimatol. Palaeoecol. 410: 390-400. hdl.handle.net/10.1016/j.palaeo.2014.06.015
    Bauersachs, T.; Stal, L.J.; Grego, M.; Schwark, L.; Schwark, L. (2014). Temperature induced changes in the heterocyst glycolipid composition of N2 fixing heterocystous cyanobacteria. Org. Geochem. 69: 98-105. dx.doi.org/10.1016/j.orggeochem.2014.02.006
    Berke, M.A.; Johnson, T.C.; Werne, J.P.; Livingstone, D.R.; Grice, K.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Characterization of the last deglacial transition in tropical East Africa: Insights from Lake Albert. Palaeogeogr. Palaeoclimatol. Palaeoecol. 409: 1-8. hdl.handle.net/10.1016/j.palaeo.2014.04.014
    Blanchet, C.; Frank, M.; Schouten, S. (2014). Asynchronous Changes in Vegetation, Runoff and Erosion in the Nile River Watershed during the Holocene. PLoS One 9(12): e115958. dx.doi.org/10.1371/journal.pone.0115958
    Blyth, A.J.; Jex, C.N.; Baker, A.; Khan, S.J.; Schouten, S. (2014). Contrasting distributions of glycerol dialkyl glycerol tetraethers (GDGTs) in speleothems and associated soils. Org. Geochem. 69: 1-10. dx.doi.org/10.1016/j.orggeochem.2014.01.013
    Bolhuis, H.; Schluepmann, H.; Kristalijn, J.; Sulaiman, Z.; Marshall, D.J. (2014). Molecular analysis of bacterial diversity in mudflats along the salinity gradient of an acidified tropical Bornean estuary (South East Asia). Aquatic Biosystems 10(10): 13 pp. dx.doi.org/10.1186/2046-9063-10-10
    Booij, K.; van Bommel, R.; van Aken, H.M.; van Haren, H.; Brummer, G.J.A.; Ridderinkhof, H. (2014). Passive sampling of nonpolar contaminants at three deep-ocean sites. Environ. Pollut. 195: 101-108. dx.doi.org/10.1016/j.envpol.2014.08.013
    Boschker, H.T.S.; Vasquez-Cardenas, D.; Bolhuis, H.; Moerdijk-Poortvliet, T.C.W.; Moodley, L. (2014). Chemoautotrophic Carbon Fixation Rates and Active Bacterial Communities in Intertidal Marine Sediments. PLoS One 9(7): e101443 1-12. hdl.handle.net/10.1371/journal.pone.0101443
    Buckles, L.K.; Weijers, J.W.H.; Tran, X.-M.; Waldron, S.; Sinninghe Damsté, J.S. (2014). Provenance of tetraether membrane lipids in a large temperate lake (Loch Lomond, UK): implications for glycerol dialkyl glycerol tetraether (GDGT)-based palaeothermometry. Biogeosciences 11: 5539-5563. dx.doi.org/10.5194/bg-11-5539-2014
    Buckles, L.K.; Weijers, J.W.H.; Verschuren, D.; Sinninghe Damsté, J.S. (2014). Sources of core and intact branched tetraether membrane lipids in the lacustrine environment: Anatomy of Lake Challa and its catchment, equatorial East Africa. Geochim. Cosmochim. Acta 140: 106-126. hdl.handle.net/10.1016/j.gca.2014.04.042
    Carnat, G.; Zhou, J.; Papakyriakou, T.; Delille, B.; Goossens, T.; Haskell, T.; Schoemann, V.; Fripiat, F.; Rintala, J.-M.; Tison, J.-L. (2014). Physical and biological controls on DMS,P dynamics in ice shelf-influenced fast ice during a winter-spring and a spring-summer transitions. J. Geophys. Res. Oceans(119): 2882-2905. dx.doi.org/10.1002/2013JC009381. hdl.handle.net/10.1002/2013JC009381
    Chevalier, N.; Bouloubassi, I.; Stadnitskaia, A.; Taphanel, M.H.; Sinninghe Damsté, J.S. (2014). Lipid biomarkers for anaerobic oxidation of methane and sulphate reduction in cold seep sediments of Nyegga pockmarks (Norwegian margin): discrepancies in contents and carbon isotope signatures. Geo-Mar. Lett. 34(2-3): 269-280. dx.doi.org/10.1007/s00367-014-0363-5
    Chivall, D.; M'Boule, D.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2014). Impact of salinity and growth phase on alkenone distributions in coastal haptophytes. Org. Geochem. 67: 31-34. dx.doi.org/10.1016/j.orggeochem.2013.12.002
    Crowe, M.A.; Power, J.F.; Morgan, X.C.; Dunfield, P.F.; Lagutin, K.; Rijpstra, W.I.C.; Vyssotski, M.; Sinninghe Damsté, J.S.; Houghton, K.M.; Ryan, J.L.J.; Stott, M.B. (2014). Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils. Int. J. Syst. Evol. Microbiol. 64: 220-227. hdl.handle.net/10.1099/ijs.0.055079-0
    De Corte, D.; Lekunberri, I.; Sintes, E.; Garcia, J.A.L.; Gonzalez, S.; Herndl, G.J. (2014). Linkage between copepods and bacteria in the North Atlantic Ocean. Aquat. Microb. Ecol. 72: 215-225. hdl.handle.net/10.3354/ame01696
    De Jonge, C.; Hopmans, E.C.; Zell, C.; Kim, J.H.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Occurrence and abundance of 6-methyl branched glycerol dialkyl glycerol tetraethers in soils: Implications for palaeoclimate reconstruction. Geochim. Cosmochim. Acta 141: 97–112. dx.doi.org/10.1016/j.gca.2014.06.013
    De Jonge, C.; Stadnitskaia, A.; Hopmans, E.C.; Cherkashov, G.; Fedotov, A.; Sinninghe Damsté, J. (2014). In situ produced branched glycerol dialkyl glycerol tetraethers in suspended particulate matter from the Yenisei River, Eastern Siberia. Geochim. Cosmochim. Acta 125: 476-491. dx.doi.org/10.1016/j.gca.2013.10.031
    de Kluijver, A.; Schoon, P.L.; Downing, J.A.; Schouten, S.; Middelburg, J.J. (2014). Stable carbon isotope biogeochemistry of lakes along a trophic gradient. Biogeosciences 11: 6265– 6276. dx.doi.org/10.5194/bg-11-6265-2014
    den Haan, J.; Visser, P.M.; Ganase, A.E.; Gooren, E.E.; Stal, L.J.; van Duyl, F.C.; Vermeij, M.J.A.; Huisman, J. (2014). Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef. Coral Reefs 33(4): 1003-1015. dx.doi.org/10.1007/s00338-014-1207-5
    Derrien, D.; Plain, C.; Courty, P.-E.; Gelhage, L.; Moerdijk-Poortvliet, T.C.W.; Thomas, F; Versini, A.; Zeller, B.; Koutika, L.-S.; Boschker, H.T.S.; Epron, D. (2014). Does the addition of labile substrate destabilise old soil organic matter? Soil Biol. Biochem. 76: 149-160. hdl.handle.net/10.1016/j.soilbio.2014.04.030
    Douglas, P.M.J.; Affek, H.P.; Ivany, L.C.; Houben, A.J.P.; Sijp, W.P.; Sluijs, A.; Schouten, S.; Pagani, M. (2014). Pronounced zonal heterogeneity in Eocene southern high-latitude sea surface temperatures. Proc. Natl. Acad. Sci. U.S.A. 111(18): 6582-6587. dx.doi.org/10.1073/pnas.1321441111
    Frieling, J.; Iakovleva, A.I.; Reichart, G.-J.; Aleksandrova, G.N.; Gnibidenko, Z.N.; Schouten, S.; Sluijs, A. (2014). Paleocene–Eocene warming and biotic response in the epicontinental West Siberian Sea. Geology (Boulder Colo.) 42(9): 767-770. dx.doi.org/10.1130/G35724.1
    Gallego-Torres, D.; Romero, O.E.; Martínez-Ruiz, F.; Kim, J.-H.; Donner, B.; Ortega-Huertas, M. (2014). Rapid bottom-water circulation changes during the last glacial cycle in the coastal low-latitude NE Atlantic. Quatern. Res. 81(2): 330-338. dx.doi.org/10.1016/j.yqres.2013.11.004
    Giusberti, L.; Bannikov, A.; Galazzo, F.B.; Fornaciari, E.; Frieling, J.; Luciani, V.; Papazzoni, C.A.; Roghi, G.; Schouten, S.; Sluijs, A.; Bosellini, F.R.; Zorzin, R. (2014). A new Fossil-Lagerstätte from the Lower Eocene of Lessini Mountains (northern Italy): A multidisciplinary approach. Palaeogeogr. Palaeoclimatol. Palaeoecol. 403: 1-15. dx.doi.org/10.1016/j.palaeo.2014.03.012
    Gros, J.; Nabi, D.; Wu¨rz, B.; Wick, L.Y.; Brussaard, C.P.D.; Huisman , J.; van der Meer, J.R.; Reddy, C.M.; Arey, J.S. (2014). First Day of an Oil Spill on the Open Sea: Early Mass Transfers of Hydrocarbons to Air and Water. Environ. Sci. Technol. 48: 9400-9411. hdl.handle.net/10.1021/es502437e
    Günther, F.; Thiele, A.; Gleixner, G.; Xu, B.Q.; Yao, T.; Schouten, S. (2014). Distribution of bacterial and archaeal ether lipids in soils and surface sediments of Tibetan lakes: Implications for GDGT-based proxies in saline high mountain lakes. Org. Geochem. 67: 19-30. dx.doi.org/10.1016/j.orggeochem.2013.11.014
    Harman, C.; Booij, K. (2014). Letter to the Editor Concerning the Viewpoint; "Recognizing the Limitations of Performance Reference Compound (PRC)-Calibration Technique in Passive Water Sampling". Environ. Sci. Technol. 48(1): 3. dx.doi.org/10.1021/es405153c
    Heinzelmann, S.M.; Bale, N.J.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2014). Critical Assessment of Glyco- and Phospholipid Separation by Using Silica Chromatography. Appl. Environ. Microbiol. 80(1): 360-365. dx.doi.org/10.1128/AEM.02817-13
    Jung, M.Y.; Park, S.J.; Kim, S.J.; Kim, J.G.; Sinninghe Damsté, J.S.; Jeon, C.O.; Rhee, S.K. (2014). A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon. Appl. Environ. Microbiol. 80(12): 3645-3655. dx.doi.org/10.1128/AEM.03730-13
    Kaserzon, S.L.; Hawker, D.W.; Booij, K.; O'Brien, D.S.; Kennedy, K.; Vermeirssen, E.L.M.; Mueller, J.F. (2014). Passive sampling of perfluorinated chemicals in water: In-situ calibration. Environ. Pollut. 186: 98-103. dx.doi.org/10.1016/j.envpol.2013.11.030
    Kaserzon, S.L.; Hawker, D.W.; Kennedy, K.; Bartkow, M.; Carter, S.; Booij, K.; Mueller, J.F. (2014). Characterisation and comparison of the uptake of ionizable and polar pesticides, pharmaceuticals and personal care products by POCIS and Chemcatchers. Environ. Sci. Process. Impacts 11: 2517–2526. dx.doi.org/10.1039/c4em00392f
    Kasper, S.; van der Meer, M.T.J.; Mets, A.; Zahn, R.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Salinity changes in the Agulhas leakage area recorded by stable hydrogen isotopes of C37 alkenones during Termination I and II. Clim. Past 10(1): 251-260. dx.doi.org/10.5194/cp-10-251-2014
    Kim, J.-H.; Buscail, R.; Fanget, A.-S.; Eyrolle-Boyer, F.; Bassetti, M.-A.; Dorhout, D.; Baas, M.; Berné, S.; Sinninghe Damsté, J.S. (2014). Impact of river channel shifts on tetraether lipids in the Rhône prodelta (NW Mediterranean): Implication for the BIT index as an indicator of palaeoflood events. Org. Geochem. 75: 99-108. dx.doi.org/10.1016/j.orggeochem.2014.06.011
    Kool, D.M.; Talbot, H.M.; Rush, D.; Ettwig, K.; Sinninghe Damsté, J.S. (2014). Rare bacteriohopanepolyols as markers for an autotrophic, intra-aerobic methanotroph. Geochim. Cosmochim. Acta 136: 114-125. dx.doi.org/10.1016/j.gca.2014.04.002
    Kulichevskaya, I.S.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2014). Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 Acidobacteria. Int. J. Syst. Evol. Microbiol. 64: 2857-2864. hdl.handle.net/10.1099/ijs.0.066175-0
    Kunihiro, T.; Veuger, B.; Vasquez Cardenas, D.; Pozzato, L.; Le Guitton, M.; Moriya, K.; Kuwae, M.; Omori, K.; Boschker, H.T.S.; Van Oevelen, D. (2014). Phospholipid-Derived Fatty Acids and Quinones as Markers for Bacterial Biomass and Community Structure in Marine Sediments. PLoS One 9(4): e96219. dx.doi.org/10.1371/journal.pone.0096219
    Lengger, S.K.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Impact of sedimentary degradation and deep water column production on GDGT abundance and distribution in surface sediments in the Arabian Sea: Implicationsfor the TEX86 paleothermometer. Geochim. Cosmochim. Acta 142: 386-399. hdl.handle.net/10.1016/j.gca.2014.07.013
    Lengger, S.K.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Fossilization and degradation of archaeal intact polar tetraether lipids in deeply buried marine sediments (Peru Margin). Geobiol. 12(3): 212-220. dx.doi.org/10.1111/gbi.12081
    Lengger, S.K.; Lipsewers, Y.A.; de Haas, H.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Lack of 13C-label incorporation suggests low turnover rates of thaumarchaeal intact polar tetraether lipids in sediments from the Iceland shelf. Biogeosciences 11(2): 201-216. dx.doi.org/10.5194/bg-11-201-2014
    Lipsewers, Y.A.; Bale, N.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S.; Villanueva, L. (2014). Seasonality and depth distribution of the abundance and activity of ammonia oxidizing microorganisms in marine coastal sediments (North Sea). Front. Microbiol. 5: 471 1-12. dx.doi.org/10.3389/fmicb.2014.00472
    Loomis, S.E.; Russell, J.M.; Eggermont, H.; Verschuren, D.; Sinninghe Damsté, J.S. (2014). Effects of temperature, pH and nutrient concentration on branched GDGT distributions in East African lakes: Implications for paleoenvironmental reconstruction. Org. Geochem. 66: 25-37. dx.doi.org/10.1016/j.orggeochem.2013.10.012
    Loomis, S.E.; Russell, J.M.; Heureux, A.M.; D'Andrea, W.J.; Sinninghe Damsté, J.S. (2014). Seasonal variability of branched glycerol dialkyl glycerol tetraethers (brGDGTs) in a temperate lake system. Geochim. Cosmochim. Acta 144: 173–187. dx.doi.org/10.1016/j.gca.2014.08.027
    López-Rodríguez, C.; Stadnitskaia, A.; De Lange, G.J.; Martínez-Ruíz, F; Comas, M.; Sinninghe Damsté, J.S. (2014). Origin of lipid biomarkers in mud volcanoes from the Alboran Sea, western Mediterranean. Biogeosciences 11: 3187-3204. hdl.handle.net/10.5194/bg-11-3187-2014
    Louterbach, M.; Roddaz, M.; Bailleul, J.; Antoine, P.O.; Adnet, S.; Kim, J.H.; van Soelen, E.E.; Parra, F.; Gérard, J.; Calderon, Y.; Gagnaison, C.; Sinninghe Damsté, J.S.; Baby, P. (2014). Evidences for a Paleocene marine incursion in southern Amazonia (Madre de Dios Sub-Andean Zone, Peru). Palaeogeogr. Palaeoclimatol. Palaeoecol. 414: 451–471. dx.doi.org/10.1016/j.palaeo.2014.09.027
    M'boule, D.; Chivall, D.; Sinke-Schoen, D.; Sinninghe Damsté, J.S.; Schouten, S.; van der Meer, M.T.J. (2014). Salinity dependent hydrogen isotope fractionation in alkenones produced by coastal and open ocean haptophyte algae. Geochim. Cosmochim. Acta 130: 126-135. dx.doi.org/10.1016/j.gca.2014.01.029
    Maat, D.S.; Bale, N.J.; Hopmans, E.C.; Baudoux, A.C.; Sinninghe Damsté, J.S.; Schouten, S.; Brussaard, C.P.D. (2014). Acquisition of intact polar lipids from the prymnesiophyte Phaeocystis globosa by its lytic virus PgV-07T. Biogeosciences 11(1): 185-194. dx.doi.org/10.5194/bg-11-185-2014
    Maat, D.S.; Crawfurd, K.J.; Timmermans, K.R.; Brussaard, C.P.D. (2014). Elevated CO2 and Phosphate Limitation Favor Micromonas pusilla through Stimulated Growth and Reduced Viral Impact. Appl. Environ. Microbiol. 80(10): 3119-3127. dx.doi.org/10.1128/AEM.03639-13
    Malkin, S.Y.; Rao, A.M.F.; Seitaj, D.; Vasquez-Cardenas, D.; Zetsche, E.-M.; Hidalgo-Martinez, S.; Boschker, H.T.S.; Meysman, F.J.R. (2014). Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor. ISME J. 8(9): 1843–1854. hdl.handle.net/10.1038/ismej.2014.41
    Mao, J.; Nierop, K.G.J.; Sinninghe Damsté, J.S.; Dekker, S.C. (2014). Roots induce stronger soil water repellency than leaf waxes. Geoderma 232-234: 328-340. hdl.handle.net/10.1016/j.geoderma.2014.05.024
    Miyatake, T.; Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S. (2014). Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method. Limnol. Oceanogr. 59(4): 1275-1287. hdl.handle.net/10.4319/lo.2014.59.4.1275
    Moerdijk-Poortvliet, T.C.W.; Brasser, J.; de Ruiter, G.; Houtekamer, M.; Bolhuis, H.; Stal, L.J.; Boschker, H.T.S. (2014). A versatile method for simultaneous stable carbon isotope analysis of DNA and RNA nucleotides by liquid chromatography/isotope ratio mass spectrometry. Rapid Comm. Mass Spectrom. 28(12): 1401-1411. dx.doi.org/10.1002/rcm.6919
    Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S. (2014). LC/IRMS analysis: A powerful technique to trace carbon flow in microphytobenthic communities in intertidal sediments. J. Sea Res. 92: 19–25. dx.doi.org/10.1016/j.seares.2013.10.002
    Mojica, K.D.A.; Brussaard, C.P.D. (2014). Factors affecting virus dynamics and microbial host-virus interactions in marine environments. FEMS Microbiol. Ecol. 89(3): 495–515. https://hdl.handle.net/10.1111/1574-6941.12343
    Mojica, K.D.A.; Evans, C.; Brussaard, C.P.D. (2014). Flow cytometric enumeration of marine viral populations at low abundances. Aquat. Microb. Ecol. 71(3): 203–209. http://dx.doi.org/10.3354/ame01672
    Moreira, I.S.; Moreira-Turcq, P.; Kim, J.H.; Turcq, B.; Cordeiro, R.C.; Caquineau, S.; Mandengo-Yogo, M.; Sinninghe Damsté, J.S. (2014). A mineralogical and organic geochemical overview of the effects of Holocene changes in Amazon River flow on three floodplain lakes. Palaeogeogr. Palaeoclimatol. Palaeoecol. 415: 152–164. dx.doi.org/10.1016/j.palaeo.2014.03.017
    Muck, S.; Griessler, T.; Köstner, N.; Klimiuk, A.; Winter, C.; Herndl, G.J. (2014). Fracture zones in the Mid Atlantic Ridge lead to alterations in prokaryotic and viral parameters in deep-water masses. Front. Microbiol. 5: 264. hdl.handle.net/ 10.3389/fmicb.2014.00264
    Mueller, B.; de Goeij, J.M.; Vermeij, M.J.A.; Mulders, Y.; van der Ent, E.; Ribes, M.; van Duyl, F.C. (2014). Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC). PLoS One 9(2): e90152. dx.doi.org/10.1371/journal.pone.0090152
    Mueller, B.; van der Zande, R.M.; van Leent, P.J.M.; Meesters, E.H.; Vermeij, M.J.A.; van Duyl, F.C. (2014). Effect of light availability on dissolved organic carbon release by Caribbean reef algae and corals. Bull. Mar. Sci. 90(3): 875-893. hdl.handle.net/10.5343/bms.2013.1062
    Mumby, P.J.; Flower, J.; Chollett, I.; Box, S.; Bozec, Y.; Fitzsimmons, C.; Forster, J.; Gill, D.; Griffith-Mumby, R.; Oxenford, H.A.; Peterson, A.; Stead, S. M.; Turner, R.; Townsley, P.; van Beukering, P.; Booker, F.; Brocke, H.; Cabañillas-Terán, N.; Canty, S.; Carricart-Ganivet, J.P.; Charlery, J.; Dryden, C.; van Duyl, F.C.; Enríquez, S.; den Haan, J.; Iglesias-Prieto, R.; Kennedy, E.; Mahon, R.; Mueller, B.; Newman, S.J.; Nugues, M.; Cortés Núñez, J.; Nurse, L.; Osinga, R.; Paris, C.; Petersen, D.; Polunin, N. V. C.; Sánchez, C.; Schep, S.; Stevens, J.; Vallès, H.; Vermeij, M.J.A.; Visser, P.M.; Whittingham, E.; Williams, S. (2014). Towards Reef Resilience and Sustainable Livelihoods. A Handbook for Caribbean Coral Reef Managers. University of Exeter: Exeter, Devon, UK. ISBN 978-0-902746-31-2. 176 pp.
    Mutterlose, J.; Bottini, C.; Schouten, S.; Sinninghe Damsté, J.S. (2014). High sea-surface temperatures during the early Aptian Oceanic Anoxic Event 1a in the Boreal Realm. Geology (Boulder Colo.) 42(5): 439-442. hdl.handle.net/10.1130/G35394.1
    Neumann, S.; Wessels, H.J.C.T.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kartal, B.; Jetten, M.S.M.; van Niftrik, L. (2014). Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis. Mol. Microbiol. 94(4): 794-802. dx.doi.org/10.1111/mmi.12816
    Pascal, P.-Y.; Dubois, S.; Boschker, H.T.S.; Gros, O. (2014). Trophic role of large benthic sulfur bacteria in mangrove sediment . Mar. Ecol. Prog. Ser. 516: 127-138 . dx.doi.org/10.3354/meps11035
    Pavlov, A.K.; Silyakova, A.; Granskog, M.A.; Bellerby, R.G.J.; Engel, A.; Schulz, K.G.; Brussaard, C.P.D. (2014). Marine CDOM accumulation during a coastal Arctic mesocosm experiment: No response to elevated pCO2 levels. J. Geophys. Res. Biogeosciences, 119(6): 1216–1230. dx.doi.org/10.1002/2013JG002587
    Philippart, C.J.M.; van Bleijswijk, J.; Kromkamp, J.C.; Zuur, A.F.; Herman, P.M.J. (2014). Reproductive phenology of coastal marine bivalves in a seasonal environment. J. Plankton Res. 36(6): 1512-1527. dx.doi.org/10.1093/plankt/fbu073
    Piquet, A.M.-T.; van de Poll, W.H.; Visser, R.J.W.; Wiencke, C.; Bolhuis, H.; Buma, A.G.J. (2014). Springtime phytoplankton dynamics in Arctic Krossfjorden and Kongsfjorden (Spitsbergen) as a function of glacier proximity. Biogeosciences 11(8): 2263-2279. dx.doi.org/10.5194/bg-11-2263-2014
    Prenafeta Boldú, F.X.; Summerbell, R.C.; de Boer, W.; Boschker, H.T.S.; Gamsformerly, W. (2014). Biodiversity and ecology of soil fungi in a primary succession of a temperate coastal dune system. Nova Hedwigia 99(3-4): 347-372. dx.doi.org/10.1127/0029-5035/2014/0203
    Rampen, S.; Datema, M.; Rodrigo-Gámiz, M.; Schouten, S.; Reichart, G.-J.; Sinninghe Damsté, J.S. (2014). Sources and proxy potential of long chain alkyl diols in lacustrine environments. Geochim. Cosmochim. Acta 144: 59–71. dx.doi.org/10.1016/j.gca.2014.08.033
    Rampen, S.W.; Willmott, V.; Kim, J.H.; Rodrigo-Gamiz, M.; Uliana, E.; Mollenhauer, G.; Schefuß, E.; Sinninghe Damsté, J.S.; Schouten, S. (2014). Evaluation of long chain 1,14-alkyl diols in marine sediments as indicators for upwelling and temperature. Org. Geochem. 76: 39–47. dx.doi.org/10.1016/j.orggeochem.2014.07.012
    Rasigraf, O.; Kool, D.M.; Jetten, M.S.M.; Ettwig, K.F.; Sinninghe Damsté, J.S. (2014). Autotrophic Carbon Dioxide Fixation via the Calvin-Benson-Bassham Cycle by the Denitrifying Methanotroph "Candidatus Methylomirabilis oxyfera". Appl. Environ. Microbiol. 80(8): 2451-2460. dx.doi.org/10.1128/AEM.04199-13
    Reul, A.; Muñoz, M.; Bautista, A.; Neale, P.J.; Sobrino, C.; Mercado, J.M.; Segovia, M.; Salles, S.; Kulk, G.; Léon, P.; van de Poll, W.H.; Pérez, E.; Buma, A.; Blanco, J.M. (2014). Effect of CO2, nutrients and light on coastal plankton. III. Trophic cascade, size structure and composition. Aquat. Biol. 22: 59-76. dx.doi.org/10.3354/ab00585
    Rodrigo-Gámiz, M.; Martínez-Ruiz, F.; Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Sea surface temperature variations in the western Mediterranean Sea over the last 20 kyr: A dual-organic proxy (UK'37 and LDI) approach. Paleoceanography 29(2): 87-98. dx.doi.org/10.1002/2013PA002466
    Rush, D.; Jaeschke, A.; Geenevasen, J.A.J.; Tegelaar, E.; Pureveen, J.; Lewan, M.D.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Generation of unusual branched long chain alkanes from hydrous pyrolysis of anammox bacterial biomass. Org. Geochem. 76: 136–145. dx.doi.org/10.1016/j.orggeochem.2014.08.002
    Rush, D.; Sinninghe Damsté, J.S.; Poulton, S.W.; Thamdrup, B.; Leigh Garside, A.; Acuña-Gonzalez, J.; Schouten, S.; Jetten, M.S.M.; Talbot, H.M. (2014). Anaerobic ammonium-oxidising bacteria: A biological source of the bacteriohopanetetrol stereoisomer in marine sediments. Geochim. Cosmochim. Acta 140: 50-63. dx.doi.org/10.1016/j.gca.2014.05.014
    Schouten, S.; Villanueva, L.; Hopmans, E.C.; van der Meer, M.T.J.; Sinninghe Damsté, J.S. (2014). Are Marine Group II Euryarchaeota significant contributors to tetraether lipids in the ocean? Proc. Natl. Acad. Sci. U.S.A. 111(41): e4285. dx.doi.org/10.1073/pnas.1416176111
    Seki, O.; Mikami, Y.; Nagao, S.; Bendle, J.A.; Nakatsuka, T.; Kim, V.I. ; Shesterkin, V.P.; Makinov, A.N.; Fukushima, M.; Moossen, H.M.; Schouten, S. (2014). Lignin phenols and BIT index distributions in the Amur River and the Sea of Okhotsk: Implications for the source and transport of particulate terrestrial organic matter to the ocean. Prog. Oceanogr. 126: 146-154. hdl.handle.net/10.1016/j.pocean.2014.05.003
    Sheik, A.R.; Brussaard, C.P.D.; Lavik, G.; Lam, P.; Musat, N.; Krupke, A.; Littmann, S.; Strous, M.; Kuypers, M.M.M. (2014). Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa. ISME J. 8(1): 212-225. dx.doi.org/10.1038/ismej.2013.135
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Foesel, B.U.; Wüst, P.K.; Overmann, J.; Tank, M.; Bryant, D.A.; Dunfield, P.F.; Houghton, K.; Stott, M. (2014). Ether- and Ester-Bound iso-Diabolic Acid and Other Lipids in Members of Acidobacteria Subdivision 4. Appl. Environ. Microbiol. 80(17): 5207-5218. hdl.handle.net/10.1128/AEM.01066-14
    Sinninghe Damsté, J.S.; Schouten, S.; Volkman, J.K. (2014). C27-C30 neohop-13(18)-enes and their saturated and aromatic derivatives in sediments: Indicators for diagenesis and water column stratification. Geochim. Cosmochim. Acta 133: 402-421. dx.doi.org/10.1016/j.gca.2014.03.008
    Sliwinska, K.K.; Dybkjær, K.; Schoon, P.L.; Beyer, C.; King, C.; Schouten, S.; Nielsen, O.B. (2014). Paleoclimatic and paleoenvironmental records of the Oligocene-Miocene transition, central Jylland, Denmark. Mar. Geol. 350: 1-15. dx.doi.org/10.1016/j.margeo.2013.12.014
    Sluijs, A.; van Roij, L.; Harrington, G.J.; Schouten, S.; Sessa, J.A.; LeVay, L.J.; Reichart, G.-J.; Slomp, C.P. (2014). Warming, euxinia and sea level rise during the Paleocene–Eocene Thermal Maximum on the Gulf Coastal Plain: implications for ocean oxygenation and nutrient cycling. Clim. Past 10: 1421-1439. hdl.handle.net/10.5194/cp-10-1421-2014
    Sorokin, D.Y.; Gumerov, V.M.; Rakitin, A.L.; Beletsky, A.V.; Sinninghe Damsté, J.S.; Muyzer, G.; Mardanov, A.V.; Ravin, N.V. (2014). Genome analysis of Chitinivibrio alkaliphilus gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum Termite Group 3. Environ. Microbiol. 16(6): 1549–1565. dx.doi.org/10.1111/1462-2920.12284
    Sorokin, D.Y.; Vejmelkova, D.; Lücker, S.; Streshinskaya, G.M.; Rijpstra, W.I.C.; Sinninghe Damsté, J.; Kleerbezem, R.; van Loosdrecht, M.C.M.; Muyzer, G.; Daims, H. (2014). Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi. Int. J. Syst. Evol. Microbiol. 64(6): 1859-1865. hdl.handle.net/10.1099/ijs.0.062232-0
    Steenhauer, L.M.; Pollard, P.C.; Brussaard, C.P.D.; Säwström, C. (2014). Lysogenic infection in sub-tropical freshwater cyanobacteria cultures and natural blooms. Mar. Freshw. Res. 65(7): 624-632. hdl.handle.net/10.1071/MF13094
    Svensson, E.; Freitas, V.; Schouten, S.; Middelburg, J.J.; van der Veer, H.W.; Sinninghe Damsté, J.S. (2014). Comparison of the stable carbon and nitrogen isotopic values of gill and white muscle tissue of fish. J. Exp. Mar. Biol. Ecol. 457: 173-179. dx.doi.org/10.1016/j.jembe.2014.04.014
    Thomas, E.K.; Clemens, S.C.; Prell, W.L.; Herbert, T.D.; Huang, Y.S.; Liu, Z.; Sinninghe Damsté, J.S.; Sun, Y.; Wen, X. (2014). Temperature and leaf wax d2H records demonstrate seasonal and regional controls on Asian monsoon proxies. Geology (Boulder Colo.) 42(12): 1075-1078. dx.doi.org/10.1130/G36289.1
    van Bleijswijk, J.; Begeman, L.; Witte, H.J.; IJsseldijk, L.L.; Brasseur, S.M.J.M.; Gröne, A.; Leopold, M.F. (2014). Detection of grey seal Halichoerus grypus DNA in attack wounds on stranded harbour porpoises Phocoena phocoena. Mar. Ecol. Prog. Ser. 513: 277-281. hdl.handle.net/10.3354/meps11004
    van Bree, L.G.J.; Rijpstra, W.I.C.; Cocquyt, C.; Al-Dhabi, N.-A.; Verschuren, D.; Sinninghe Damsté, J.S.; de Leeuw, J.W. (2014). Origin and palaeoenvironmental significance of C25 and C27n-alk-1-enes in a 25,000-year lake-sedimentary record from equatorial East Africa. Geochim. Cosmochim. Acta 145: 89–102. dx.doi.org/10.1016/j.gca.2014.08.035
    van Gelder, A.H.; Sousa, D.Z.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Stams, A.J.M.; Sánchez-Andrea, I. (2014). Ercella succinigenes gen. nov., sp. nov., ananaerobic succinate-producing bacterium. Int. J. Syst. Evol. Microbiol. 64(7): 2449-2454. dx.doi.org/10.1099/ijs.0.058966-0
    van Helmond, N.A.G.M.; Sluijs, A.; Reichart, G.J; Sinninghe Damsté, J.S.; Slomp, C.P.; Brinkhuis, H. (2014). A perturbed hydrological cycle during Oceanic Anoxic Event 2. Geology (Boulder Colo.) 42(2): 123-126. dx.doi.org/10.1130/G34929.1
    van Soelen, E.E.; Lammers, J.M.; Eglinton, T.I.; Sinninghe Damsté, J.S.; Reichart, G.-J. (2014). Unusual C35 to C38 alkenones in mid-Holocene sediments from a restricted estuary (Charlotte Harbor, Florida). Org. Geochem. 70: 20-28. dx.doi.org/10.1016/j.orggeochem.2014.01.021
    Vellekoop, J.; Sluijs, A.; Smit, J.; Schouten, S.; Weijers, J.W.H.; Sinninghe Damsté, J.S.; Brinkhuis, H. (2014). Rapid short-term cooling following the Chicxulub impact at the Cretaceous-Paleogene boundary. Proc. Natl. Acad. Sci. U.S.A. 111(21): 7537-7541. dx.doi.org/10.1073/pnas.1319253111
    Villanueva, L.; Besseling, M.; Rodrigo-Gamiz, M.; Rampen, S.; Verschuren, D.; Sinninghe Damsté, J.S. (2014). Potential biological sources of long chain alkyl diols in a lacustrine system. Org. Geochem. 68: 27-30. dx.doi.org/10.1016/j.orggeochem.2014.01.001
    Villanueva, L.; Hopmans, E.C.; Bale, N.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Diversity and distribution of a key sulpholipid biosynthetic gene in marine microbial assemblages. Environ. Microbiol. 16(3): 774-787. dx.doi.org/10.1111/1462-2920.12202
    Villanueva, L.; Rijpstra, W.I.C.; Schouten, S.; Sinninghe Damsté, J.S. (2014). Genetic biomarkers of the sterol-biosynthetic pathway in microalgae. Environmental Microbiology Reports 6(1): 35-44. dx.doi.org/10.1111/1758-2229.12106
    Villanueva, L.; Sinninghe Damsté, J.S.; Schouten, S. (2014). A re-evaluation of the archaeal membrane lipid biosynthetic pathway. Nat. Rev., Microbiol. 12(6): 438-448. dx.doi.org/10.1038/nrmicro3260
    Villanueva, L.; Speth, D.R.; van Alen, T.; Hoischen, A.; Jetten, M.S.M. (2014). Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone. Front. Microbiol. 5: 31, 1-9. dx.doi.org/10.3389/fmicb.2014.00031
    Weijers, J.W.H.; Schefuß, E.; Kim, J.-H.; Sinninghe Damsté, J.; Schouten, S. (2014). Constraints on the sources of branched tetraether membrane lipids in distal marine sediments. Org. Geochem. 72: 14-22. dx.doi.org/10.1016/j.orggeochem.2014.04.011
    Welsh, J.E.; van der Meer, J.; Brussaard, C.P.D.; Thieltges, D.W. (2014). Inventory of organisms interfering with transmission of a marine trematode. J. Mar. Biol. Ass. U.K. 94(4): 697–702. dx.doi.org/10.1017/S0025315414000034
    Wijgerde, T.; van Melis, A.; Silva, C.I.F.; Leal, M.C.; Vogels, L.; Mutter, C.; Osinga, R. (2014). Red Light Represses the Photophysiology of the Scleractinian Coral Stylophora pistillata. PLoS One 9(3): e92781. dx.doi.org/10.1371/journal.pone.0092781
    Winter, C.; Garcia, J.A.L.; Weinbauer, M.G.; DuBow, M.S.; Herndl, G.J. (2014). Comparison of Deep-Water Viromes from the Atlantic Ocean and the Mediterranean Sea. PLoS One 9(6): e100600 1-8. hdl.handle.net/10.1371/journal.pone.0100600
    Zell, C. (2014). Origin and fate of branched tetraether lipids in river drainage systems : Implications for the use of the MBT/CBT proxy as a continental palaeothermometer in marine sedimentary records. PhD Thesis. [S.n.]: [s.l.]. 201 pp. hdl.handle.net/1874/292558
    Zell, C.; Kim, J.H.; Balsinha, M.; Dorhout, D.; Fernandes, C.; Baas, M.; Sinninghe Damsté, J.S. (2014). Transport of branched tetraether lipids from the Tagus River basin to the coastal ocean of the Portuguese margin: consequences for the interpretation of the MBT’/CBT paleothermometer. Biogeosciences 11: 5637-5655. dx.doi.org/10.5194/bg-11-5637-2014
    Zell, C.; Kim, J.H.; Hollander, D.; Lorenzoni, L.; Baker, P.; Guizan Silva, G.S.; Sinninghe Damsté, J.S. (2014). Sources and distributions of branched and isoprenoid tetraether lipids on the Amazon shelf and fan: Implications for the use of GDGT-based proxies in marine sediments. Geochim. Cosmochim. Acta 139: 293–312. hdl.handle.net/10.1016/j.gca.2014.04.038
    Zhang, Y.; Maignien, L.; Stadnitskaia, A.; Boeckx, P.; Xiao, X.; Boon, N. (2014). Stratified community responses to methane and sulfate supplies in mud volcano deposits: insights from an in vitro experiment. PLoS One 9(11): e113004. dx.doi.org/10.1371/journal.pone.0113004
    Zhang, Y.; Zhao, Z.; Dai, M.; Jiao, N.; Herndl, G.J. (2014). Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea. Mol. Ecol. 23(9): 2260-2274. dx.doi.org/10.1111/mec.12739
  • 2013
    Assmy, P.; Smetacek, V.; Klaas, C.; Henjes, J.; Strass, V.H.; Arrieta, J.M.; Bathmann, U.; Cisewski, B.; Fuchs, N.; Herndl, G.J. (2013). Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current. Proc. Natl. Acad. Sci. U.S.A. 110(51): 20633–20638. hdl.handle.net/10.1073/pnas.1309345110
    Bale, N.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Different seasonality of pelagic and benthic Thaumarchaeota in the North Sea. Biogeosciences 10: 7195–7206. hdl.handle.net/10.5194/bg-10-7195-2013
    Baltar, F.; Arístegui, J.; Gasol, J.M.; Yokokawa, T.; Herndl, G.J. (2013). Bacterial Versus Archaeal Origin of Extracellular Enzymatic Activity in the Northeast Atlantic Deep Waters. Microb. Ecol. 65(2): 277-288. dx.doi.org/10.1007/s00248-012-0126-7
    Baltar, F.; Reinthaler, T.; Herndl, G.J.; Pinhassi, J. (2013). Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. PLoS One 8(4). dx.doi.org/10.1371/journal.pone.0061051
    Bauersachs, T.; Miller, S.R.; van der Meer, M.T.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Distribution of long chain heterocyst glycolipids in cultures of the thermophilic cyanobacterium Mastigocladus laminosus and a hot spring microbial mat. Org. Geochem. 56: 19-24. dx.doi.org/10.1016/j.orggeochem.2012.11.013
    Benavides, M.; Agawin, N.S.R.; Aristegui, J.; Peene, J.; Stal, L.J. (2013). Dissolved organic nitrogen and carbon release by a marine unicellular diazotrophic cyanobacterium. Aquat. Microb. Ecol. 69(1): 69-80. dx.doi.org/10.3354/ame01621
    Bergauer, K.; Sintes, E.; van Bleijswijk, J.; Witte, H.; Herndl, G.J. (2013). Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior. FEMS Microbiol. Ecol. 84(3): 461-473. dx.doi.org/10.1111/1574-6941.12073
    Bijl, P.K.; Bendle, J.A.P.; Bohaty, S.M.; Pross, J.; Schouten, S.; Tauxe, L.; Stickley, C.E.; McKay, R.M.; Röhl, U.; Olney, M.; Sluijs, A.; Escutia, C.; Brinkhuis, H.; Expedition 318 Scientists (2013). Eocene cooling linked to early flow across the Tasmanian Gateway. Proc. Natl. Acad. Sci. U.S.A. 110(24): 9645-9650. dx.doi.org/10.1073/pnas.1220872110
    Blaga, C.I.; Reichart, G.J.; Lotter, A.F.; Anselmetti, F.S.; Sinninghe Damsté, J.S.; Anselmetti, F.S.; Sinninghe Damsté, J.S. (2013). A TEX86 lake record suggests simultaneous shifts in temperature in Central Europe and Greenland during the last deglaciation. Geophys. Res. Lett. 40(5): 948-953. dx.doi.org/10.1002/grl.50181
    Blanchet, C.; Tjallingii, R.; Frank, M.; Lorenzen, J.; Reitz, A.; Brown, K.; Feseker, T.; Brückmann, W. (2013). High- and low-latitude forcing of the Nile River regime during the Holocene inferred from laminated sediments of the Nile deep-sea fan. Earth Planet. Sci. Lett. 364: 98-110. dx.doi.org/10.1016/j.epsl.2013.01.009
    Blyth, A.J.; Schouten, S. (2013). Calibrating the glycerol dialkyl glycerol tetraether temperature signalin speleothems. Geochim. Cosmochim. Acta 109: 312-328. dx.doi.org/10.1016/j.gca.2013.02.009
    Boekema, E.J.; Scheffers, D.-J.; van Bezouwen, L.S.; Bolhuis, H.; Folea, I.M. (2013). Focus on Membrane Differentiation and Membrane Domains in the Prokaryotic Cell. J. Mol. Microbiol. Biotechnol. 23(4-5): 345-356. dx.doi.org/10.1159/000351361
    Boelen, P.; van Dijk, R.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Buma, A.G.J. (2013). On the potential application of polar and temperate marine microalgae for EPA and DHA production. AMB Express 3(26): 1-9. hdl.handle.net/10.1186/2191-0855-3-26
    Bolhuis, H.; Fillinger, L.; Stal, L.J. (2013). Coastal Microbial Mat Diversity along a Natural Salinity Gradient. PLoS One 8(5). dx.doi.org/10.1371/journal.pone.0063166
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    Schouten, S.; Villareal, T.A.; Hopmans, E.C.; Mets, A.; Swanson, K.M.; Sinninghe Damsté, J.S. (2013). Endosymbiotic heterocystous cyanobacteria synthesize different heterocyst glycolipids than free-living heterocystous cyanobacteria. Phytochemistry 85: 115-121. dx.doi.org/10.1016/j.phytochem.2012.09.002
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    van der Meer, M.T.J.; Benthien, A.; Bijma, J.; Schouten, S.; Sinninghe Damsté, J.S. (2013). Alkenone distribution impacts the hydrogen isotopic composition of the C37:2 and C37:3 alkan-2-ones in Emiliania huxleyi. Geochim. Cosmochim. Acta 111: 162-166. dx.doi.org/10.1016/j.gca.2012.10.041
    Van Oostende, N.; Moerdijk-Poortvliet, T.C.W.; Boschker, H.T.S.; Vyverman, W.; Sabbe, K. (2013). Release of dissolved carbohydrates by Emiliania huxleyi and formation of transparent exopolymer particles depend on algal life cycle and bacterial activity. Environ. Microbiol. 15(5): 1514-1531. hdl.handle.net/10.1111/j.1462-2920.2012.02873.x
    van Soelen, E.E.; Wagner-Cremer, F.; Sinninghe Damsté, J.S.; Reichart, G.J. (2013). Reconstructing tropical cyclone frequency using hydrogen isotope ratios of sedimentary n-alkanes in northern Queensland, Australia. Palaeogeogr. Palaeoclimatol. Palaeoecol. 376: 66-72. dx.doi.org/10.1016/j.palaeo.2013.02.019
    Veuger, B.; Pitcher, A.; Schouten, S.; Sinninghe Damsté, J.S.; Middelburg, J.J. (2013). Nitrification and growth of autotrophic nitrifying bacteria and Thaumarchaeota in the coastal North Sea. Biogeosciences 10(3): 1775-1785. dx.doi.org/10.5194/bg-10-1775-2013
    Vissers, E.W.; Blaga, C.I.; Bodelier, P.L.E.; Muyzer, G.; Schleper, C.; Sinninghe Damsté, J.S.; Tourna, M.; Laanbroek, H.J. (2013). Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake. FEMS Microbiol. Ecol. 83(2): 515-526. dx.doi.org/10.1111/1574-6941.12013
    Voss, B.; Bolhuis, H.; Fewer, D.P.; Kopf, M.; Möke, F.; Haas, F.; El-Shehawy, R.; Hayes, P.; Bergman, B.; Sivonen, K.; Dittmann, E.; Scanlan, D.J.; Hagemann, M.; Stal, L.J.; Hess, W.R. (2013). Insights into the Physiology and Ecology of the Brackish-Water-Adapted Cyanobacterium Nodularia spumigena CCY9414 Based on a Genome-Transcriptome Analysis. PLoS One 8(3). dx.doi.org/10.1371/journal.pone.0060224
    Zell, C.; Kim, J.-H.; Abril, G.; Lima Sobrinho, R.; Dorhout, D.; Moreiro-Turcq, P.; Sinninghe Damsté, J.S. (2013). Impact of seasonal hydrological variation on the distributions of tetraether lipids along the Amazon River in the central Amazon basin: implications for the MBT/CBT paleothermometer and the BIT index. Front. Microbiol. 4(228). hdl.handle.net/10.3389/fmicb.2013.00228
    Zell, C.; Kim, J.H.; Moreira-Turcq, P.; Abril, G.; Hopmans, E.C.; Bonnet, M.-P.; Lima Sobrinho, R.; Sinninghe Damsté, J.S. (2013). Disentangling the origins of branched tetraether lipids and crenarchaeol in the lower Amazon River: Implications for GDGT-based proxies. Limnol. Oceanogr. 58(1): 343-353. dx.doi.org/10.4319/lo.2013.58.1.0343
  • 2012
    Baltar, F.; Aristegui, J.; Gasol, J.M.; Herndl, G.J. (2012). Microbial Functioning and Community Structure Variability in the Mesopelagic and Epipelagic Waters of the Subtropical Northeast Atlantic Ocean. Appl. Environ. Microbiol. 78(9): 3309-3316. dx.doi.org/10.1128/AEM.07962-11
    Bednaršek, N.; Tarling, G.A.; Bakker, D.C.E.; Fielding, S.; Jones, E.M.; Venables, H.J.; Ward, P.; Kuzirian, A.; Lézé, B.; Feely, R.A.; Murphy, E.J. (2012). Extensive dissolution of live pteropods in the Southern Ocean. Nature Geoscience 5(12): 881-885. dx.doi.org/10.1038/NGEO1635
    Berke, M.A.; Johnson, T.C.; Werne, J.P.; Grice, K.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Molecular records of climate variability and vegetation response since the Late Pleistocene in the Lake Victoria basin, East Africa. Quat. Sci. Rev. 55: 59-74. dx.doi.org/10.1016/j.quascirev.2012.08.014
    Berke, M.A.; Johnson, T.C.; Werne, J.P.; Schouten, S.; Sinninghe Damsté, J.S. (2012). A mid-Holocene thermal maximum at the end of the African Humid Period. Earth Planet. Sci. Lett. 351: 95-104. dx.doi.org/10.1016/j.epsl.2012.07.008
    Booij, K.; Arifin, Z.; Purbonegoro, T. (2012). Perylene dominates the organic contaminant profile in the Berau delta, East Kalimantan, Indonesia. Mar. Pollut. Bull. 64(5): 1049-1054. dx.doi.org/10.1016/j.marpolbul.2012.02.021
    Brandsma, J.; Hopmans, E.C.; Brussaard, C.P.D.; Witte, H.J.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Spatial distribution of intact polar lipids in North Sea surface waters: Relationship with environmental conditions and microbial community composition. Limnol. Oceanogr. 57(4): 959-973. dx.doi.org/10.4319/lo.2012.57.4.0959
    Brandsma, J.; Hopmans, E.C.; Philippart, C.J.M.; Veldhuis, M.J.W.; Schouten, S.; Sinninghe Damsté, J.S.S. (2012). Low temporal variation in the intact polar lipid composition of North Sea coastal marine water reveals limited chemotaxonomic value. Biogeosciences 9(3): 1073-1084. dx.doi.org/10.5194/bg-9-1073-2012
    Coulon, F.; Chronopoulou, P.M.; Fahy, A.; Païssé, S.; Goñi-Urriza, M.; Peperzak, L.; Acuña Alvarez, L.; McKew, B.A.; Underwood, G.J.C.; Brussaard, C.P.D.; Timmis, K.N.; Duran, R.; McGenity, T.J. (2012). Central Role of Dynamic Tidal Biofilms Dominated by Aerobic Hydrocarbonoclastic Bacteria and Diatoms in the Biodegradation of Hydrocarbons in Coastal Mudflats. Appl. Environ. Microbiol. 78(10): 3638-3648. dx.doi.org/10.1128/AEM.00072-12
    De Corte, D.; Sintes, E.; Yokokawa, T.; Reinthaler, T.; Herndl, G.J. (2012). Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME J. 6(8): 1566-1577. dx.doi.org/10.1038/ismej.2011.214
    de Jong, J.; Schoemann, V.; Lannuzel, D.; Croot, P.; de Baar, H.; Tison, J.-L. (2012). Natural iron fertilization of the Atlantic sector of the Southern Ocean by continental shelf sources of the Antarctic Peninsula. J. Geophys. Res. 117(G01029): 25. hdl.handle.net/10.1029/2011JG001679
    Dedysh, S.N.; Kulichevskaya, I.S.; Serkebaeva, Y.M.; Mityaeva, M.A.; Sorokin, V.V.; Suzina, N.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2012). Bryocella elongata gen. nov., sp nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008. Int. J. Syst. Evol. Microbiol. 62: 654-664. dx.doi.org/10.1099/ijs.0.031898-0
    Eelderink, C.; Moerdijk-Poortvliet, T.C.W.; Wang, H.W.; Schepers, M.; Preston, T.; Boer, T.; Vonk, R.J.; Schierbeek, H.; Priebe, M.G. (2012). The Glycemic Response Does Not Reflect the In Vivo Starch Digestibility of Fiber-Rich Wheat Products in Healthy Men. J. Nutr. 142(2): 258-263. dx.doi.org/10.3945/jn.111.147884
    Evans, C.; Brussaard, C.P.D. (2012). Viral lysis and microzooplankton grazing of phytoplankton throughout the Southern Ocean. Limnol. Oceanogr. 57(6): 1826-1837. dx.doi.org/10.4319/lo.2012.57.6.1826
    Evans, C.; Brussaard, C.P.D. (2012). Regional Variation in Lytic and Lysogenic Viral Infection in the Southern Ocean and Its Contribution to Biogeochemical Cycling. Appl. Environ. Microbiol. 78(18): 6741-6748. dx.doi.org/10.1128/AEM.01388-12
    Fallet, U.; Castañeda, I.S; Henry-Edwards, A; Richter, T.O.; Boer, W.; Schouten, S.; Brummer, G.J. (2012). Sedimentation and burial of organic and inorganic temperature proxies in the Mozambique Channel, SW Indian Ocean. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 59: 37-53. dx.doi.org/10.1016/j.dsr.2011.10.002
    Fietz, S.; Huguet, C.; Bendle, J.; Escala, M.; Gallacher, C.; Herfort, L.; Jamieson, R.; Martínez-Garcia, A.; McClymont, E.L.; Peck, V.L.; Prahl, F.G.; Rossi, S.; Rueda, G.; Sanson-Barrera, A.; Rosell-Melé, A. (2012). Co-variation of crenarchaeol and branched GDGTs in globally-distributed marine and freshwater sedimentary archives. Global Planet. Change 92-93: 275-285. dx.doi.org/10.1016/j.gloplacha.2012.05.020
    Flores, G.E.; Hunter, R.C.; Liu, Y.T.; Mets, A.; Schouten, S.; Reysenbach, A.L. (2012). Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic members of the class Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits. Int. J. Syst. Evol. Microbiol. 62: 1252-1258. dx.doi.org/10.1099/ijs.0.033001-0
    Garcia Costas, A.M.; Tsukatani, Y.; Rijpstra, W.I.C.; Schouten, S.; Welander, P.V.; Summons, R.E.; Bryant, D.A. (2012). Identification of the Bacteriochlorophylls, Carotenoids, Quinones, Lipids, and Hopanoids of "Candidatus Chloracidobacterium thermophilum". J. Bacteriol. 194(5): 1158-1168. dx.doi.org/10.1128/JB.06421-11
    Handley, L.; O'Halloran, A.; Pearson, P.N.; Hawkins, E.; Nicholas, C.J.; Schouten, S.; McMillan, I.K.; Pancost, R.D. (2012). Changes in the hydrological cycle in tropical East Africa during the Paleocene-Eocene Thermal Maximum. Palaeogeogr. Palaeoclimatol. Palaeoecol. 329: 10-21. dx.doi.org/10.1016/j.palaeo.2012.02.002
    Hannula, S.E.; Boschker, H.T.S.; de Boer, W.; van Veen, J.A. (2012). 13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline. New Phytol. 194(3): 784-799. dx.doi.org/10.1111/j.1469-8137.2012.04089.x
    Harada, N.; Sato, M.; Seki, O.; Timmermann, A.; Moossen, H.; Bendle, J.; Nakamura, Y.; Kimoto, K.; Okazaki, Y.; Nagashima, K.; Gorbarenko, S.A.; Ijiri, A.; Nakatsuka, T.; Menviel, L.; Chikamoto, M.O.; Abe-Ouchi, A.; Schouten, S. (2012). Sea surface temperature changes in the Okhotsk Sea and adjacent North Pacific during the last glacial maximum and deglaciation. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 61-64: 93-105. dx.doi.org/10.1016/j.dsr2.2011.12.007
    Ismail-Ben Ali, A.; El Bour, M.; Ktari, L.; Bolhuis, H.; Ahmed, M.; Boudabbous, A.; Stal, L. (2012). Jania rubens-associated bacteria: molecular identification and antimicrobial activity. J. Appl. Phycol. 24(3): 525-534. dx.doi.org/10.1007/s10811-011-9758-0
    Jenkyns, H.C.; Schouten-Huibers, L.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Warm Middle Jurassic-Early Cretaceous high-latitude sea-surface temperatures from the Southern Ocean. Clim. Past 8(1): 215-226. dx.doi.org/10.5194/cp-8-215-2012
    Kabel, K.; Moros, M.; Porsche, C.; Neumann, T.; Adolphi, F.; Andersen, T.J.; Siegel, H.; Gerth, M.; Leipe, T.; Jansen, E.; Sinninghe Damsté, J.S. (2012). Impact of climate change on the Baltic Sea ecosystem over the past 1,000 years. Nat. Clim. Chang. 2(12): 871-874. dx.doi.org/10.1038/NCLIMATE1595
    Kaserzon, S.L.; Kennedy, K.; Hawker, D.W.; Thompson, J.; Carter, S.; Roach, A.C.; Booij, K.; Mueller, J.F. (2012). Development and Calibration of a Passive Sampler for Perfluorinated Alkyl Carboxylates and Sulfonates in Water. Environ. Sci. Technol. 46(9): 4985-4993. dx.doi.org/10.1021/es300593a
    Kim, J.G.; Jung, M.Y.; Park, S.J.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Madsen, E.L.; Min, D.; Kim, J.S.; Kim, G.J.; Rhee, S.K. (2012). Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ. Microbiol. 14(6): 1528-1543. dx.doi.org/10.1111/j.1462-2920.2012.02740.x
    Kim, J.H.; Crosta, X.; Willmott, V.; Renssen, H.; Bonnin, J.; Helmke, P.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Holocene subsurface temperature variability in the eastern Antarctic continental margin. Geophys. Res. Lett. 39. dx.doi.org/10.1029/2012GL051157
    Kim, J.H.; Romero, O.E.; Lohmann, G.; Donner, B.; Laepple, T.; Haam, E.; Sinninghe Damsté, J.S. (2012). Pronounced subsurface cooling of North Atlantic waters off Northwest Africa during Dansgaard-Oeschger interstadials. Earth Planet. Sci. Lett. 339: 95-102. dx.doi.org/10.1016/j.epsl.2012.05.018
    Kim, J.H.; Zell, C.; Moreira-Turcq, P.; Pérez, M.A.P.; Abril, G.; Mortillaro, J.M.; Weijers, J.W.H.; Meziane, T.; Sinninghe Damsté, J.S. (2012). Tracing soil organic carbon in the lower Amazon River and its tributaries using GDGT distributions and bulk organic matter properties. Geochim. Cosmochim. Acta 90: 163-180. dx.doi.org/10.1016/j.gca.2012.05.014
    Kool, D.M.; Zhu, B.L.; Rijpstra, W.I.C.; Jetten, M.S.M.; Ettwig, K.F.; Sinninghe Damsté, J.S. (2012). Rare Branched Fatty Acids Characterize the Lipid Composition of the Intra-Aerobic Methane Oxidizer "Candidatus Methylomirabilis oxyfera". Appl. Environ. Microbiol. 78(24): 8650-8656. dx.doi.org/10.1128/AEM.02099-12
    Kulichevskaya, I.S.; Detkova, E.N.; Bodelier, P.L.E.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Dedysh, S.N. (2012). Singulisphaera rosea sp nov., a planctomycete from acidic Sphagnum peat, and emended description of the genus Singulisphaera. Int. J. Syst. Evol. Microbiol. 62: 118-123. dx.doi.org/10.1099/ijs.0.025924-0
    Kulichevskaya, I.S.; Kostina, L.A.; Valáškova, V.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; de Boer, W.; Dedysh, S.N. (2012). Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood. Int. J. Syst. Evol. Microbiol. 62: 1512-1520. dx.doi.org/10.1099/ijs.0.034819-0
    Kulichevskaya, I.S.; Serkebaeva, Y.M.; Kim, Y.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Liesack, W.; Dedysh, S.N. (2012). Telmatocola sphagniphila gen. nov., sp. nov., a Novel Dendriform Planctomycete from Northern Wetlands. Front. Microbiol. 3: 146; 1-9. hdl.handle.net/10.3389/fmicb.2012.00146
    Kulk, G.; de Vries, P.; van de Poll, W.H.; Visser, R.J.W.; Buma, A.G.J. (2012). Temperature-dependent growth and photophysiology of prokaryotic and eukaryotic oceanic picophytoplankton. Mar. Ecol. Prog. Ser. 466: 43-55. dx.doi.org/10.3354/meps09898
    Lengger, S.K.; Hopmans, E.C.; Reichart, G.J.; Nierop, K.G.J.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone. Part II: Selective preservation and degradation in sediments and consequences for the TEX86. Geochim. Cosmochim. Acta 98: 244-258. dx.doi.org/10.1016/j.gca.2012.05.003
    Lengger, S.K.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Comparison of extraction and work up techniques for analysis of core and intact polar tetraether lipids from sedimentary environments. Org. Geochem. 47: 34-40. dx.doi.org/10.1016/j.orggeochem.2012.02.009
    Liebich, V.; Stehouwer, P.P.; Veldhuis, M. (2012). Re-growth of potential invasive phytoplankton following UV-based ballast water treatment. Aquat. Invasions 7(1): 29-36. dx.doi.org/10.3391/ai.2012.7.1.004
    Lohmann, R.; Booij, K.; Smedes, F.; Vrana, B. (2012). Use of passive sampling devices for monitoring and compliance checking of POP concentrations in water. Environm. Sc. & Poll. Res. 19(6): 1885-1895. dx.doi.org/10.1007/s11356-012-0748-9
    Loomis, S.E.; Russell, J.M.; Ladd, B.; Street-Perrott, F.A.; Sinninghe Damsté, J.S. (2012). Calibration and application of the branched GDGT temperature proxy on East African lake sediments. Earth Planet. Sci. Lett. 357: 277-288. dx.doi.org/10.1016/j.epsl.2012.09.031
    Lopes dos Santos, R.A. (2012). Reconstruction of late Quaternary marine and terrestrial environmental conditions of Northwest Africa and Southeast Australia A multiple organic proxy study using marine sediments. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-218-7. 145 pp. hdl.handle.net/1874/258158
    Lopes dos Santos, R.A.; Wilkins, D.; De Deckker, P.; Schouten, S. (2012). Late Quaternary productivity changes from offshore Southeastern Australia: A biomarker approach. Palaeogeogr. Palaeoclimatol. Palaeoecol. 363: 48-56. dx.doi.org/10.1016/j.palaeo.2012.08.013
    McKay, R.; Naish, T.; Carter, L.; Riesselman, C.; Dunbar, R.; Sjunneskog, C.; Winter, D.; Sangiorgi, F.; Warren, C.; Pagani, M.; Schouten, S.; Willmott, V.; Levy, R.; DeConto , R.M.; Powell, R.D. (2012). Antarctic and Southern Ocean influences on Late Pliocene global cooling. Proc. Natl. Acad. Sci. U.S.A. 109(17): 6423-6428. dx.doi.org/10.1073/pnas.1112248109
    Mutterlose, J.; Malkoc, M.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Reconstruction of vertical temperature gradients in past oceans - Proxy data from the Hauterivian-early Barremian (Early Cretaceous) of the Boreal Realm. Palaeogeogr. Palaeoclimatol. Palaeoecol. 363: 135-143. dx.doi.org/10.1016/j.palaeo.2012.09.006
    Niemann, H.; Stadnitskaia, A.; Wirth, S.B.; Gilli, A.; Anselmetti, F.S.; Sinninghe Damsté, J.S.S.; Schouten, S.; Hopmans, E.C.; Lehmann, M.F. (2012). Bacterial GDGTs in Holocene sediments and catchment soils of a high Alpine lake: application of the MBT/CBT-paleothermometer. Clim. Past 8(3): 889-906. dx.doi.org/10.5194/cp-8-889-2012
    Pade, N.; Compaoré, J.; Klähn, S.; Stal, L.J.; Hagemann, M. (2012). The marine cyanobacterium Crocosphaera watsonii WH8501 synthesizes the compatible solute trehalose by a laterally acquired OtsAB fusion protein. Environ. Microbiol. 14(5): 1261-1271. dx.doi.org/10.1111/j.1462-2920.2012.02709.x
    Peterse, F.; van der Meer, J.; Schouten, S.; Weijers, J.W.H.; Fierer, N.; Jackson, R.B.; Kim, J.H.; Sinninghe Damsté, J.S. (2012). Revised calibration of the MBT-CBT paleotemperature proxy based on branched tetraether membrane lipids in surface soils. Geochim. Cosmochim. Acta 96: 215-229. dx.doi.org/10.1016/j.gca.2012.08.011
    Pfreundt, U.; Stal, L.J.; Voss, B.; Hess, W.R. (2012). Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium. ISME J. 6(7): 1367-1377. dx.doi.org/10.1038/ismej.2011.199
    Philippart, C.J.M.; Amaral, A.; Asmus, R.; van Bleijswijk, J.; Bremner, J.; Buchholz, F.; Cabanellas-Reboredo, M.; Catarino, D.; Cattrijsse, A.; Charles, F.; Comtet, T.; Cunha, A.; Deudero, S.; Duchêne, J.-C.; Fraschetti, S.; Gentil, F.; Gittenberger, A.; Guizien, K.; Gonçalves, J.M.; Guarnieri, G.; Hendriks, I.; Hussel, B.; Pinheiro Vieira, R.; Reijnen, B.T.; Sampaio, I.; Serrão, E.; Sousa Pinto, I.; Thiebaut, E.; Viard, F.; Zuur, A.F. (2012). Spatial synchronies in the seasonal occurrence of larvae of oysters (Crassostrea gigas) and mussels (Mytilus edulis/galloprovincialis) in European coastal waters. Est., Coast. and Shelf Sci. 108: 52-63. dx.doi.org/10.1016/j.ecss.2012.05.014
    Pross, J.; Contreras, L.; Bijl, P.K.; Greenwood, D.R.; Bohaty, S.M.; Schouten, S.; Bendle, J.A.; Röhl, U.; Tauxe, L.; Raine, J.I.; Huck, C.E.; van de Flierdt, T.; Jamieson, S.S.R.; Stickley, C.E.; van de Schootbrugge, B.; Escutia, C.; Escutia, C.; Brinkhuis, H. (2012). Persistent near-tropical warmth on the Antarctic continent during the early Eocene epoch. Nature (Lond.) 488(7409): 73-77. dx.doi.org/10.1038/nature11300
    Rampen, S.W.; Willmott, V.; Kim, J.H.; Uliana, E.; Mollenhauer, G.; Schefuss, E.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Long chain 1,13-and 1,15-diols as a potential proxy for palaeotemperature reconstruction. Geochim. Cosmochim. Acta 84: 204-216. dx.doi.org/10.1016/j.gca.2012.01.024
    Raven, J.A.; Crawfurd, K. (2012). Environmental controls on coccolithophore calcification. Mar. Ecol. Prog. Ser. 470: 137-166. dx.doi.org/10.3354/meps09993
    Richoz, S.; van de Schootbrugge, B.; Pross, J.; Püttmann, W.; Quan, T.M.; Lindström, S.; Heunisch, C.; Fiebig, J.; Maquil, R.; Schouten, S.; Hauzenberger, C.A.; Wignall, P.B. (2012). Hydrogen sulphide poisoning of shallow seas following the end-Triassic extinction. Nature Geoscience 5(9): 662-667. dx.doi.org/10.1038/NGEO1539
    Rush, D.; Hopmans, E.C.; Wakeham, S.G.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Occurrence and distribution of ladderane oxidation products in different oceanic regimes. Biogeosciences 9(7): 2407-2418. dx.doi.org/10.5194/bg-9-2407-2012
    Rush, D.; Wakeham, S.G.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2012). Biomarker evidence for anammox in the oxygen minimum zone of the Eastern Tropical North Pacific. Org. Geochem. 53: 80-87. dx.doi.org/10.1016/j.orggeochem.2012.02.005
    Rush, D.J. (2012). Ladderanes as tracers for present and past anaerobic ammonium oxidation. PhD Thesis. Universiteit Utrecht: [s.l.]. ISBN 978-94-6203-168-5. 133 pp. hdl.handle.net/1874/257091
    Sachse, D.; Billault, I.; Bowen, G.J.; Chikaraishi, Y.; Dawson, T.E.; Feakins, S.J.; Freeman, Katherine; Magill, C.R.; McInerney, F.A.; van der Meer, M.T.J.; Polissar, P.; Robins, R.J.; Sachs, J.P.; Schmidt, H.L.; Sessions, A.L.; White, J.W.C.; West, J.B.; Kahmen, A. (2012). Molecular Paleohydrology: Interpreting the Hydrogen- Isotopic Composition of Lipid Biomarkers from Photosynthesizing Organisms. Annu. Rev. Earth Planet. Sci. 40: 221-249. dx.doi.org/10.1146/annurev-earth-042711-105535
    Sáenz, J.P.; Hopmans, E.C.; Rogers, D.; Henderson, P.B.; Charette, M.A.; Schouten, S.; Casciotti, K.L.; Sinninghe Damsté, J.S.; Eglinton, T.I. (2012). Distribution of anaerobic ammonia-oxidizing bacteria in a subterranean estuary. Mar. Chem. 136: 7-13. dx.doi.org/10.1016/j.marchem.2012.04.004
    Sauder, L.A.; Peterse, F.; Schouten, S.; Neufeld, J.D. (2012). Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant. Environ. Microbiol. 14(9): 2589-2600. dx.doi.org/10.1111/j.1462-2920.2012.02786.x
    Schouten, S.; Pitcher, A.; Hopmans, E.C.; Villanueva, L.; van Bleijswijk, J.; Sinninghe Damsté, J.S. (2012). Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids in the Arabian Sea oxygen minimum zone: I. Selective preservation and degradation in the water column and consequences for the TEX86. Geochim. Cosmochim. Acta 98: 228-243. https://dx.doi.org/10.1016/j.gca.2012.05.002
    Seki, O.; Schmidt, D.N.; Schouten, S.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Pancost, R.D. (2012). Paleoceanographic changes in the Eastern Equatorial Pacific over the last 10 Myr. Paleoceanography 27. dx.doi.org/10.1029/2011PA002158
    Severin, I.; Confurius-Guns, V.; Stal, L.J. (2012). Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats. Arch. Microbiol. 194(6): 483-491. dx.doi.org/10.1007/s00203-011-0787-5
    Sheik, A.R. (2012). Viral regulation of nutrient assimilation by algae and prokaryotes. PhD Thesis. Universität Bremen: [s.l.]. 1-137 pp.
    Sinninghe Damsté, J.S.; Ossebaar, J.; Schouten, S.; Verschuren, D. (2012). Distribution of tetraether lipids in the 25-ka sedimentary record of Lake Challa: extracting reliable TEX86 and MBT/CBT palaeotemperatures from an equatorial African lake. Quat. Sci. Rev. 50: 43-54. dx.doi.org/10.1016/j.quascirev.2012.07.001
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Jung, M.Y.; Kim, J.G.; Rhee, S.K.; Stieglmeier, M.; Schleper, C. (2012). Intact Polar and Core Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Group I.1a and I.1b Thaumarchaeota in Soil. Appl. Environ. Microbiol. 78(19): 6866-6874. dx.doi.org/10.1128/AEM.01681-12
    Smetacek, V.; Klaas, C.; Strass, V.H.; Assmy, P.; Montresor, M.; Cisewski, B.; Savoye, N.; Webb, A.; d'Ovidio, F.; Arrieta, J.M.; Bathmann, U.; Bellerby, R.; Berg, G.M.; Croot, P.; Gonzalez, S.; Henjes, J.; Herndl, G.J.; Hoffmann, L.J.; Leach, H.; Losch, M.; Mills, M.M.; Neill, C.; Peeken, I.; Röttgers, R.; Sachs, O.; Sauter, E.; Schmidt, M.M.; Schwarz, J.; Terbrüggen, A.; Wolf-Gladrow, D. (2012). Deep carbon export from a Southern Ocean iron-fertilized diatom bloom. Nature (Lond.) 487(7407): 313-319. dx.doi.org/10.1038/nature11229
    Sorokin, D.Y.; Lücker, S.; Vejmelkova, D.; Kostrikina, N.A.; Kleerebezem, R.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Le Paslier, D.; Muyzer, G.; Wagner, M.; van Loosdrecht, M.C.M.; Daims, H. (2012). Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi. ISME J. 6(12): 2245-2256. dx.doi.org/10.1038/ismej.2012.70
    Tagliabue, A.; Mtshali, T.; Aumont, O.; Bowie, A.R.; Klunder, M.B.; Roychoudhury, A.N.; Swart, S. (2012). A global compilation of dissolved iron measurements: focus on distributions and processes in the Southern Ocean. Biogeosciences 9(6): 2333-2349. dx.doi.org/10.5194/bg-9-2333-2012
    Thomas, H.; Craig, S.E.; Greenan, B.J.W.; Burt, W.; Herndl, G.J.; Higginson, S.; Salt, L.; Shadwick, E.H.; Urrego-Blanco, J. (2012). Direct observations of diel biological CO2 fixation on the Scotian Shelf, northwestern Atlantic Ocean. Biogeosciences 9(6): 2301-2309. dx.doi.org/10.5194/bg-9-2301-2012
    Tierney, J.E.; Schouten, S.; Pitcher, A.; Hopmans, E.C.; Sinninghe Damsté, J.S. (2012). Core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in Sand Pond, Warwick, Rhode Island (USA): Insights into the origin of lacustrine GDGTs. Geochim. Cosmochim. Acta 77: 561-581. dx.doi.org/10.1016/j.gca.2011.10.018
    van Bentum, E.C.; Reichart, G.J.; Forster, A.; Sinninghe Damsté, J.S.S. (2012). Latitudinal differences in the amplitude of the OAE-2 carbon isotopic excursion: pCO2 and paleo productivity. Biogeosciences 9(2): 717-731. dx.doi.org/10.5194/bg-9-717-2012
    van Bentum, E.C.; Reichart, G.J.; Sinninghe Damsté, J.S. (2012). Organic matter provenance, palaeoproductivity and bottom water anoxia during the Cenomanian/Turonian oceanic anoxic event in the Newfoundland Basin (northern proto North Atlantic Ocean). Org. Geochem. 50: 11-18. dx.doi.org/10.1016/j.orggeochem.2012.05.013
    van Winden, J.F.; Reichart, G.J.; McNamara, N.P.; Benthien, A.; Sinninghe Damsté, J.S. (2012). Temperature-Induced Increase in Methane Release from Peat Bogs: A Mesocosm Experiment. PLoS One 7(6): e39614. dx.doi.org/10.1371/journal.pone.0039614
    van Winden, J.F.; Talbot, H.M.; De Vleeschouwer, F.; Reichart, G.J.; Sinninghe Damsté, J.S. (2012). Variation in methanotroph-related proxies in peat deposits from Misten Bog, Hautes-Fagnes, Belgium. Org. Geochem. 53: 73-79. dx.doi.org/10.1016/j.orggeochem.2012.07.001
    van Winden, J.F.; Talbot, H.M.; Kip, N.; Reichart, G.J.; Pol, A.; McNamara, N.P.; Jetten, M.S.M.; Op den Camp, H.J.M.; Sinninghe Damsté, J.S. (2012). Bacteriohopanepolyol signatures as markers for methanotrophic bacteria in peat moss. Geochim. Cosmochim. Acta 77: 52-61. dx.doi.org/10.1016/j.gca.2011.10.026
    Wade, B.S.; Houben, A.J.P.; Quaijtaal, W.; Schouten, S.; Rosenthal, Y.; Miller, K.G.; Katz, M.E.; Wright, J.D.; Brinkhuis, H. (2012). Multiproxy record of abrupt sea-surface cooling across the Eocene-Oligocene transition in the Gulf of Mexico. Geology (Boulder Colo.) 40(2): 159-162. hdl.handle.net/10.1130/G32577.1
    Wakeham, S.G.; Turich, C.; Schubotz, F.; Podlaska, A.; Li, X.N.; Varela, R.; Astor, Y.; Sáenz, J.P.; Rush, D.; Sinninghe Damsté, J.S.; Summons, R.E.; Taylor, G.T.; Scranton, M.I.; Hinrichs, K.U. (2012). Biomarkers, chemistry and microbiology show chemoautotrophy in a multilayer chemocline in the Cariaco Basin. Deep-Sea Res., Part 1, Oceanogr. Res. Pap. 63: 133-156. dx.doi.org/10.1016/j.dsr.2012.01.005
    Weinbauer, M.G.; Ogier, J.; Maier, C. (2012). Microbial abundance in the coelenteron and mucus of the cold-water Coral Lophelia pertusa and in bottom water of the reef environment. Aquat. Biol. 16(3): 209-216. dx.doi.org/10.3354/ab00443
    Woltering, M.; Werne, J.P.; Kish, J.L.; Hicks, R.; Sinninghe Damsté, J.S.; Schouten, S. (2012). Vertical and temporal variability in concentration and distribution of thaumarchaeotal tetraether lipids in Lake Superior and the implications for the application of the TEX86 temperature proxy. Geochim. Cosmochim. Acta 87: 136-153. dx.doi.org/10.1016/j.gca.2012.03.024
    Yan, J.; Haaijer, S.C.M.; Op den Camp, H.J.M.; van Niftrik, L.; Stahl, D.A.; Könneke, M.; Rush, D.; Sinninghe Damsté, J.S.; Hu, Y.Y.; Jetten, M.S.M. (2012). Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system. Environ. Microbiol. 14(12): 3146-3158. dx.doi.org/10.1111/j.1462-2920.2012.02894.x
    Yokokawa, T.; Sintes, E.; de Corte, D.; Olbrich, K.; Herndl, G.J. (2012). Differentiating leucine incorporation of Archaea and Bacteria throughout the water column of the eastern Atlantic using metabolic inhibitors. Aquat. Microb. Ecol. 66(3): 247-256. dx.doi.org/10.3354/ame01575
  • 2011
    Agogue, H.; Lamy, D.; Neal, P.R.; Sogin, M.L.; Herndl, G.J. (2011). Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol. Ecol. 20(2): 258-274. dx.doi.org/10.1111/j.1365-294X.2010.04932.x
    Bauersachs, T.; Compaoré, J.; Severin, I.; Hopmans, E.C.; Schouten, S.; Stal, L.J.; Sinninghe Damsté, J.S. (2011). Diazotrophic microbial community of coastal microbial mats of the southern North Sea. Geobiol. 9(4): 349-359. dx.doi.org/10.1111/j.1472-4669.2011.00280.x
    Blaga, C.I.; Reichart, G.J.; Vissers, E.W.; Lotter, A.F.; Anselmetti, F.S.; Sinninghe Damsté, J.S.; Sinninghe Damsté, J.S. (2011). Seasonal changes in glycerol dialkyl glycerol tetraether concentrations and fluxes in a perialpine lake: Implications for the use of the TEX86 and BIT proxies. Geochim. Cosmochim. Acta 75(21): 6416-6428. dx.doi.org/10.1016/j.gca.2011.08.016
    Boere, A.C.; Rijpstra, W.I.C.; de Lange, G.J.; Malinverno, E.; Sinninghe Damsté, J.S.; Coolen, M.J.L.; Sinninghe Damsté, J.S.; Coolen, M.J.L. (2011). Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean. Paleoceanography 26. dx.doi.org/10.1029/2010PA001948
    Boere, A.C.; Rijpstra, W.I.C.; de Lange, G.J.; Sinninghe Damsté, J.S.; Coolen, M.J.L.; Sinninghe Damsté, J.S.; Coolen, M.J.L. (2011). Preservation potential of ancient plankton DNA in Pleistocene marine sediments. Geobiol. 9(5): 377-393. dx.doi.org/10.1111/j.1472-4669.2011.00290.x
    Boere, A.C.; Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Volkman, J.K.; Coolen, M.J.L. (2011). Source-specific variability in post-depositional DNA preservation with potential implications for DNA based paleoecological records. Org. Geochem. 42(10): 1216-1225. dx.doi.org/10.1016/j.orggeochem.2011.08.005
    Bos, A.R.; Gumanao, G.S.; van Katwijk, M.M.; Saceda, M.M.; Tejada, R.L.P.; Mueller, B. (2011). Ontogenetic habitat shift, population growth, and burrowing behavior of the Indo-Pacific beach star, Archaster typicus (Echinodermata; Asteroidea). Mar. Biol. (Berl.) 158: 639-648. hdl.handle.net/10.1007/s00227-010-1588-0
    Brandsma, J. (2011). The origin and fate of intact polar lipids in the marine environment. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-6266-286-9. 1-223 pp. hdl.handle.net/1874/213581
    Brandsma, J.; van de Vossenberg, J.; Risgaard-Petersen, N.; Schmid, M.C.; Engstrom, P.; Eurenius, K.; Hulth, S.; Jaeschke, A.; Abbas, B.; Hopmans, E.C.; Strous, M.; Schouten, S.; Jetten, M.S.M.; Sinninghe Damsté, J.S. (2011). A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden. Environmental Microbiology Reports 3(3): 360-366. dx.doi.org/10.1111/j.1758-2229.2010.00233.x
    Caley, T.; Kim, J.H.; Malaize, B.; Giraudeau, J.; Laepple, T.; Caillon, N.; Charlier, K.; Rebaubier, H.; Rossignol, L.; Castañeda, I.S; Schouten, S.; Sinninghe Damsté, J.S. (2011). High-latitude obliquity as a dominant forcing in the Agulhas current system. Clim. Past 7(4): 1285-1296. dx.doi.org/10.5194/cp-7-1285-2011
    Castañeda, I.S; Schouten, S. (2011). A review of molecular organic proxies for examining modern and ancient lacustrine environments. Quat. Sci. Rev. 30(21-22): 2851-2891. dx.doi.org/10.1016/j.quascirev.2011.07.009
    de Corte, D.; Sintes, E.; Yokokawa, T.; Herndl, G.J.; de Corte, D. (2011). Changes in viral and bacterial communities during the ice-melting season in the coastal Arctic (Kongsfjorden, Ny-Ålesund). Environ. Microbiol. 13(7): 1827-1841. dx.doi.org/10.1111/j.1462-2920.2011.02497.x
    Dupont, L.M.; Caley, T.; Kim, J.H.; Castañeda, I.S; Malaize, B.; Giraudeau, J. (2011). Glacial-interglacial vegetation dynamics in South Eastern Africa coupled to sea surface temperature variations in the Western Indian Ocean. Clim. Past 7(4): 1209-1224. dx.doi.org/10.5194/cp-7-1209-2011
    Evans, C.; Thomson, P.G.; Davidson, A.T.; Bowie, A.R.; van den Enden, R.; Witte, H.; Brussaard, C.P.D. (2011). Potential climate change impacts on microbial distribution and carbon cycling in the Australian Southern Ocean. Deep-Sea Res., Part 2, Top. Stud. Oceanogr. 58(21-22): 2150-2161. dx.doi.org/10.1016/j.dsr2.2011.05.019
    Fawcett, P.J.; Werne, J.P.; Anderson, R.S.; Heikoop, J.M.; Brown, E.T.; Berke, M.A.; Smith, S.J.; Goff, F.; Donohoo-Hurley, L.; Cisneros-Dozal, L.M.; Schouten, S.; Sinninghe Damsté, J.S.; Huang, Y.S.; Toney, J.; Fessenden, J.; WoldeGabriel, G.; Atudorei, V.; Geissman, J.W.; Allen, C.D. (2011). Extended megadroughts in the southwestern United States during Pleistocene interglacials. Nature (Lond.) 470(7335): 518-521. dx.doi.org/10.1038/nature09839
    Gazeau, F.; Gattuso, J.P.; Greaves, M.; Elderfield, H.; Peene, J.; Heip, C.H.R.; Middelburg, J.J. (2011). Effect of Carbonate Chemistry Alteration on the Early Embryonic Development of the Pacific Oyster (Crassostrea gigas). PLoS One 6(8): e23010; 1-8. dx.doi.org/10.1371/journal.pone.0023010
    Hassler, C.S.; Schoemann, V.; Nichols, C.M.; Butler, E.C.V.; Boyd, P.W.; Nichols, C.M. (2011). Saccharides enhance iron bioavailability to Southern Ocean phytoplankton. Proc. Natl. Acad. Sci. U.S.A. 108(3): 1076-1081. dx.doi.org/10.1073/pnas.1010963108
    Hu, B.L.; Rush, D.; van der Biezen, E.; Zheng, P.; van Mullekom, M.; Schouten, S.; Sinninghe Damsté, J.S.; Smolders, A.J.P.; Jetten, M.S.M.; Kartal, B. (2011). New Anaerobic, Ammonium-Oxidizing Community Enriched from Peat Soil. Appl. Environ. Microbiol. 77(3): 966-971. dx.doi.org/10.1128/AEM.02402-10
    Huguet, C.; Martrat, B.; Grimalt, J.O.; Sinninghe Damsté, J.S.; Schouten, S. (2011). Coherent millennial-scale patterns in U37k' and TEX86H temperature records during the penultimate interglacial-to-glacial cycle in the western Mediterranean. Paleoceanography 26. dx.doi.org/10.1029/2010PA002048
    Jung, M.Y.; Park, S.J.; Min, D.; Kim, J.S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S.; Kim, G.J.; Madsen, E.L.; Rhee, S.K. (2011). Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil. Appl. Environ. Microbiol. 77(24): 8635-8647. dx.doi.org/10.1128/AEM.05787-11
    Kaserzon, S.L.; Kennedy, K.; Hawker, D.W.; Holling, N.; Escher, B.I.; Booij, K.; Mueller, J.F. (2011). Development and calibration of a passive sampler for N-nitrosodimethylamine (NDMA) in water. Chemosphere 84(4): 497-503. dx.doi.org/10.1016/j.chemosphere.2011.03.018
    Kaur, G.; Mountain, B.W.; Hopmans, E.C.; Pancost, R.D. (2011). Preservation of Microbial Lipids in Geothermal Sinters. Astrobiol. 11(3): 259-274. dx.doi.org/10.1089/ast.2010.0540
    Kaur, G.; Mountain, B.W.; Hopmans, E.C.; Pancost, R.D. (2011). Relationship between lipid distribution and geochemical environment within Champagne Pool, Waiotapu, New Zealand. Org. Geochem. 42(10): 1203-1215. dx.doi.org/10.1016/j.orggeochem.2011.08.006
    Kim, J.-H.; Peterse, F.; Willmott, V.; Klitgaard Kristensen, D.; Baas, M.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Large ancient organic matter contributions to Arctic marine sediments (Svalbard). Limnol. Oceanogr. 56(4): 1463-1474. dx.doi.org/10.4319/lo.2011.56.4.1463
    Kim, J.H.; Talbot, H.M.; Zarzycka, B.; Bauersachs, T.; Wagner, T. (2011). Occurrence and abundance of soil-specific bacterial membrane lipid markers in the Têt watershed (southern France): Soil-specific BHPs and branched GDGTs. Geochem. Geophys. Geosyst. 12. dx.doi.org/10.1029/2010GC003364
    Kip, N.; Ouyang, W.J.; van Winden, J.; Raghoebarsing, A.; van Niftrik, L.; Pol, A.; Pan, Y.; Bodrossy, L.; van Donselaar, E.G.; Reichart, G.J.; Jetten, M.S.M.; Sinninghe Damsté, J.S.; Op den Camp, H.J.M. (2011). Detection, Isolation, and Characterization of Acidophilic Methanotrophs from Sphagnum Mosses. Appl. Environ. Microbiol. 77(16): 5643-5654. dx.doi.org/10.1128/AEM.05017-11
    Klánová, J.; Diamond, M.; Jones, K.C.; Lammel, G.; Lohmann, R.; Pironne, N.; Scheringer, M.; Balducci, C.; Booij, K. (2011). Identifying the Research and Infrastructure Needs for the Global Assessment of Hazardous Chemicals Ten Years after Establishing the Stockholm Convention. Environ. Sci. Technol. 45: 7617–7619. hdl.handle.net/10.1021/es202751f
    Kulk, G.; van de Poll, W.H.; Visser, R.J.W.; Buma, A.G.J. (2011). Distinct differences in photoacclimation potential between prokaryotic and eukaryotic oceanic phytoplankton. J. Exp. Mar. Biol. Ecol. 398(1-2): 63-72. dx.doi.org/10.1016/j.jembe.2010.12.011
    Lannuzel, D.; Bowie, A.R.; van der Merwe, P.C.; Townsend, A.T.; Schoemann, V. (2011). Distribution of dissolved and particulate metals in Antarctic sea ice. Mar. Chem. 124(1-4): 134-146. dx.doi.org/10.1016/j.marchem.2011.01.004
    Llabres, M.; Agustí, S.; Herndl, G.J. (2011). Diel in situ picophytoplankton cell death cycles coupled with cell division. J. Phycol. 47(6): 1247-1257. dx.doi.org/10.1111/j.1529-8817.2011.01072.x
    Loomis, S.E.; Russell, J.M.; Sinninghe Damsté, J.S. (2011). Distributions of branched GDGTs in soils and lake sediments from western Uganda: Implications for a lacustrine paleothermometer. Org. Geochem. 42(7): 739-751. dx.doi.org/10.1016/j.orggeochem.2011.06.004
    Luttikhuizen, P.C.; Bol, A.; Witte, H.; van Bleijswijk, J.; Haddrath, O.; Baker, A.J.; Piersma, T.; Reneerkens, J.; Piersma, T. (2011). Novel and cross-species microsatellite markers for parentage analysis in Sanderling Calidris alba. J. Ornithol. 152(3): 807-810. dx.doi.org/10.1007/s10336-011-0681-6
    Maier, C.; de Kluijver, A.; Agis, M.; Brussaard, C.P.D.; van Duyl, F.C.; Weinbauer, M.G. (2011). Dynamics of nutrients, total organic carbon, prokaryotes and viruses in onboard incubations of cold-water corals. Biogeosciences 8(9): 2609-2620. dx.doi.org/10.5194/bg-8-2609-2011
    Masquelier, S.; Foulon, E.; Jouenne, F.; Ferréol, M.; Brussaard, C.P.D.; Vaulot, D. (2011). Distribution of eukaryotic plankton in the English Channel and the North Sea in summer. J. Sea Res. 66(2): 111-122. dx.doi.org/10.1016/j.seares.2011.05.004
    Moodley, L.; Nigam, R.; Ingole, B.; Babu, C.P.; Panchang, R.; Nanajkar, M.; Sivadas, S.; van Breugel, P.; van Ijzerloo, L.; Rutgers, R.; Heip, C.H.R.; Middelburg, J.J. (2011). Oxygen minimum seafloor ecological (mal) functioning. J. Exp. Mar. Biol. Ecol. 398(1-2): 91-100. dx.doi.org/10.1016/j.jembe.2010.12.015
    Morgan-Smith, D.; Herndl, G.J.; van Aken, H.M.; Bochdansky, A.B. (2011). Abundance of eukaryotic microbes in the deep subtropical North Atlantic. Aquat. Microb. Ecol. 65(2): 103-115. dx.doi.org/10.3354/ame01536
    Mußmann, M; Brito, I.; Pitcher, A.; Sinninghe Damste, J.S.; Hatzenpichler, R.; Richter, A.; Nielsen, J.L.; Nielsen, P.H.; Daims, H.; Müller, A.; Wagner, M.; Head, I.M. (2011). Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers. Proc. Natl. Acad. Sci. U.S.A. 108(40): 16771-16776. dx.doi.org/10.1073/pnas.1106427108
    Nierop, K.G.J.; Speelman, E.N.; de Leeuw, J.W.; Reichart, G.J. (2011). The omnipresent water fern Azolla caroliniana does not contain lignin. Org. Geochem. 42(7): 846-850. dx.doi.org/10.1016/j.orggeochem.2011.05.001
    O'Brien, D.S.; Booij, K.; Hawker, D.W.; Mueller, J.F. (2011). Method for the in Situ Calibration of a Passive Phosphate Sampler in Estuarine and Marine Waters. Environ. Sci. Technol. 45(7): 2871-2877. dx.doi.org/10.1021/es101645z
    Peperzak, L.; Brussaard, C.P.D. (2011). Flow Cytometric Applicability of Fluorescent Vitality Probes on Phytoplankton. J. Phycol. 47(3): 692-702. dx.doi.org/10.1111/j.1529-8817.2011.00991.x
    Peterse, F. (2011). Environmental controls on the distribution of bacterial tetraether membrane lipids: Constraints on the MBT-CBT paleothermometer. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-8570-839-1. 1-143 pp. hdl.handle.net/1874/208643
    Peterse, F.; Hopmans, E.C.; Schouten, S.; Rijpstra, W.I.C.; Sinninghe Damsté, J.S. (2011). Identification and distribution of intact polar branched tetraether lipids in peat and soil. Org. Geochem. 42(9): 1007-1015. dx.doi.org/10.1016/j.orggeochem.2011.07.006
    Peterse, F.; Prins, M.A.; Beets, C.J.; Troelstra, S.R.; Zheng, H.B.; Gu, Z.Y.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Decoupled warming and monsoon precipitation in East Asia over the last deglaciation. Earth Planet. Sci. Lett. 301(1-2): 256-264. dx.doi.org/10.1016/j.epsl.2010.11.010
    Pitcher, A. (2011). Intact polar lipids of ammonia-oxidizing Archaea: Structural diversity anapplication inmolecular ecology. Geologica ultraiectina, mededelingen van de faculteit aardwetenschappen, 337. PhD Thesis. [S.n.]: [s.l.]. ISBN 978-90-5744-198-1. 1-227 pp. http://hdl.handle.net/1874/200226
    Pitcher, A.; Hopmans, E.C.; Mosier, A.C.; Park, S.J.; Rhee, S.K.; Francis, C.A.; Schouten, S. (2011). Core and Intact Polar Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Ammonia-Oxidizing Archaea Enriched from Marine and Estuarine Sediments. Appl. Environ. Microbiol. 77(10): 3468-3477. dx.doi.org/10.1128/AEM.02758-10
    Pitcher, A.; Villanueva, L.; Hopmans, E.C.; Schouten, S.; Reichart, G.J.; Sinninghe Damsté, J.S. (2011). Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. ISME J. 5(12): 1896-1904. dx.doi.org/10.1038/ismej.2011.60
    Pitcher, A.; Wuchter, C.; Siedenberg, K.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Crenarchaeol tracks winter blooms of ammonia-oxidizing Thaumarchaeota in the coastal North Sea. Limnol. Oceanogr. 56(6): 2308-2318. dx.doi.org/10.4319/lo.2011.56.6.2308
    Powers, L.A.; Johnson, T.C.; Werne, J.P.; Castañeda, I.S.; Hopmans, E.C.; Sinninghe Damsté, J.S.; Schouten, S. (2011). Organic geochemical records of environmental variability in Lake Malawi during the last 700 years, Part I: The TEX86 temperature record. Palaeogeogr. Palaeoclimatol. Palaeoecol. 303(1-4): 133-139. dx.doi.org/10.1016/j.palaeo.2010.09.006
    Rampen, S.W.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Occurrence of long chain 1,14-diols in Apedinella radians. Org. Geochem. 42(5): 572-574. dx.doi.org/10.1016/j.orggeochem.2011.03.009
    Ruhl, M.; Bonis, N.R.; Reichart, G.J.; Sinninghe Damsté, J.S.; Kürschner, W.M. (2011). Atmospheric Carbon Injection Linked to End-Triassic Mass Extinction. Science (Wash.) 333(6041): 430-434. dx.doi.org/10.1126/science.1204255
    Rush, D.; Jaeschke, A.; Hopmans, E.C.; Geenevasen, J.A.J.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Short chain ladderanes: Oxic biodegradation products of anammox lipids. Geochim. Cosmochim. Acta 75(6): 1662-1671. dx.doi.org/10.1016/j.gca.2011.01.013
    Santos, S.; Luttikhuizen, P.C.; Campos, J.; Heip, C.H.R.; van der Veer, H.W. (2011). Spatial distribution patterns of the peppery furrow shell Scrobicularia plana (da Costa, 1778) along the European coast: A review. J. Sea Res. 66(3): 238-247. dx.doi.org/10.1016/j.seares.2011.07.001
    Schoon, P.L.; Sluijs, A.; Sinninghe Damsté, J.S.; Schouten, S. (2011). Stable carbon isotope patterns of marine biomarker lipids in the Arctic Ocean during Eocene Thermal Maximum 2. Paleoceanography 26. dx.doi.org/10.1029/2010PA002028
    Sinninghe Damsté, J.S.; Rijpstra, W.I.C.; Hopmans, E.C.; Weijers, J.W.; Foesel, B.U.; Overmann, J.; Dedysh, S.N. (2011). 13,16-Dimethyl Octacosanedioic Acid (iso-Diabolic Acid), a Common Membrane-Spanning Lipid of Acidobacteria Subdivisions 1 and 3. Appl. Environ. Microbiol. 77(12): 4147-4154. dx.doi.org/10.1128/AEM.00466-11
    Sinninghe Damsté, J.S.; Verschuren, D.; Ossebaar, J.; Blokker, J.; van Houten, R.; Plessen, B.; Schouten, S. (2011). A 25,000-year record of climate-induced changes in lowland vegetation of eastern equatorial Africa revealed by the stable carbon-isotopic composition of fossil plant leaf waxes. Earth Planet. Sci. Lett. 302(1-2): 236-246. dx.doi.org/10.1016/j.epsl.2010.12.025
    Sluijs, A.; Bijl, P.K.; Schouten, S.; Röhl, U.; Reichart, G.-J.; Brinkhuis, H. (2011). Southern Ocean warming, sea level and hydrological change during the Paleocene-Eocene thermal maximum. Clim. Past 7(1): 47-61. hdl.handle.net/10.5194/cp-7-47-2011
    Tierney, J.; Russell, J.M.; Sinninghe Damsté, J.S.; Huang, Y.S.; Verschuren, D. (2011). Late Quaternary behavior of the East African monsoon and the importance of the Congo Air Boundary. Quat. Sci. Rev. 30(7-8): 798-807. dx.doi.org/10.1016/j.quascirev.2011.01.017
    Trommer, G.; Siccha, M.; Rohling, E.J.; Grant, K.; van der Meer, M.T.J.; Schouten, S.; Baranowski, U.; Kucera, M. (2011). Sensitivity of Red Sea circulation to sea level and insolation forcing during the last interglacial. Clim. Past 7(3): 941-955. dx.doi.org/10.5194/cp-7-941-2011
    van de Poll, W.H.V.; Lagunas, M.; de Vries, T.; Buma, A.; Visser, R.J.W. (2011). Non-photochemical quenching of chlorophyll fluorescence and xanthophyll cycle responses after excess PAR and UVR in Chaetoceros brevis, Phaeocystis Antarctica and coastal Antarctic phytoplankton. Mar. Ecol. Prog. Ser. 426: 119-131. dx.doi.org/10.3354/meps09000
    van Duyl, F.C.; Moodley, L.; Nieuwland, G.; van Ijzerloo, L.; van Soest, R.W.M.; Houtekamer, M.; Meesters, E.H.; Middelburg, J.J. (2011). Coral cavity sponges depend on reef-derived food resources: stable isotope and fatty acid constraints. Mar. Biol. (Berl.) 158(7): 1653-1666. dx.doi.org/10.1007/s00227-011-1681-z
    van Geel, B.; Gelorini, V.; Lyaruu, A.; Aptroot, A.; Rucina, S.; Marchant, R.; Sinninghe Damsté, J.S.; Verschuren, D. (2011). Diversity and ecology of tropical African fungal spores from a 25,000-year palaeoenvironmental record in southeastern Kenya. Rev. Palaeobot. Palynol. 164(3-4): 174-190. dx.doi.org/10.1016/j.revpalbo.2011.01.002
    Varela, M.M.; van Aken, H.M.; Sintes, E.; Reinthaler, T.; Herndl, G.J. (2011). Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environ. Microbiol. 13(6): 1524-1533. dx.doi.org/10.1111/j.1462-2920.2011.02457.x
    Weijers, J.W.H.; Bernhardt, B.; Peterse, F.; Werne, J.P.; Dungait, J.A.J.; Schouten, S.; Sinninge Damsté, J.S. (2011). Absence of seasonal patterns in MBT-CBT indices in mid-latitude soils. Geochim. Cosmochim. Acta 75(11): 3179-3190. dx.doi.org/10.1016/j.gca.2011.03.015
    Weijers, J.W.H.; Lim, K.L.H.; Aquilina, A.; Sinninghe Damsté, J.S.; Pancost, R.D. (2011). Biogeochemical controls on glycerol dialkyl glycerol tetraether lipid distributions in sediments characterized by diffusive methane flux. Geochem. Geophys. Geosyst. 12. dx.doi.org/10.1029/2011GC003724
    Weijers, J.W.H.; Steinmann, P.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Bacterial tetraether membrane lipids in peat and coal: Testing the MBT-CBT temperature proxy for climate reconstruction. Org. Geochem. 42(5): 477-486. dx.doi.org/10.1016/j.orggeochem.2011.03.013
    Wolff, C.; Haug, G.H.; Timmermann, A.; Brauer, A.; Sigman, D.M.; Cane, M.A.; Verschuren, D.; Sinninghe Damsté, J.S. (2011). Reduced Interannual Rainfall Variability in East Africa During the Last Ice Age. Science (Wash.) 333(6043): 743-747. dx.doi.org/10.1126/science.1203724
    Woltering, M.; Johnson, T.C.; Werne, J.P.; Schouten, S.; Sinninghe Damsté, J.S. (2011). Late Pleistocene temperature history of Southeast Africa: A TEX86 temperature record from Lake Malawi. Palaeogeogr. Palaeoclimatol. Palaeoecol. 303(1-4): 93-102. dx.doi.org/10.1016/j.palaeo.2010.02.013

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