Adhitya, A.; Folkard, A.M.; Govers, L.L.; van Katwijk, M.M.; de Iongh, H.H.; Herman, P.M.J.; Bouma, T.J. (2016). The exchange of dissolved nutrients between the water column and substrate pore-water due to hydrodynamic adjustment at seagrass meadow edges: A flume study. Limnol. Oceanogr. 61: 2286–2295. dx.doi.org/10.1002/lno.10376
Aguera A, van de Koppel J, Jansen JM, Smaal AC, Bouma TJ (2015) Beyond food: a foundation species facilitates its own predator. OIKOS 124: 1367-1373
Bal KD, Bouma TJ, Buis K, Struyf E, Schoelynck J, Backx H, Meire P (2011) Trade-off between drag reduction and light interception of macrophytes: comparing five aquatic plants with contrasting morphology. Functional Ecology 2011
Bal KD, Brion N, Woule-Ebongue V, Schoelynck J, Jooste A, Barron C, Dehairs F, Meire P, Bouma TJ (2013) Influence of hydraulics on the uptake of ammonium by two freshwater plants. Freshwater Biology (2013) 58, 2452–2463 doi:10.1111/fwb.12222
Balke T, Bouma TJ, Horstman EM, Webb EL, Erftemeijer PLA, Herman PMJ (2011) Windows of opportunity: thresholds to mangrove seedling establishment on tidal flats. Mar Ecol Prog Ser. Vol. 440: 1–9 (doi: 10.3354/meps09364)
Borsje, B.W., Bouma, T.J., Rabaut, M., Herman, P.M.J., and Hulscher, S.J.M.H., 2014. Formation and erosion of biogeomorphological structures: A model study on the tube-building polychaete Lanice conchilega. Limnology and Oceanography 59, 1297-1309.
Bouma TJ, De Vries MB, Low E, Peralta G, Tánczos IC, van de Koppel J, Herman PMJ (2005) Trade-offs related to ecosystem engineering: A case study on stiffness of emerging macrophytes. Ecology 86: 2187-2199.
Bouma TJ, van Duren LA, Temmerman S, Claverie T, Blanco-Garcia A, Ysebaert T, Herman PMJ (2007) Spatial patterns in flow- and sedimentation within vegetation patches: comparing field, flume and hydrodynamic modelling experiments. Continental Shelf Research 27: 1020-1045.
Bouma TJ, Friedrichs M, van Wesenbeeck BK, Temmerman S, Graf G, Herman PMJ (2009) Density-dependent linkage of scale-dependent feedbacks: a flume study on the intertidal macrophyte Spartina anglica. OIKOS 118: 260-268.
Chang ER, Veeneklaas RM, Buitenwerf R, Bakker JP, Bouma TJ (2008) To move or not to move: determinants of seed retention in a tidal marsh. Functional Ecology 22: 720–727.
Gillis LG, Bouma TJ, Jones CG, Kiswara W, Ziegler AD, Herman PMJ (2014) Leaf transport in mimic mangrove forests and seagrass beds. Marine Ecology Progress Series 498: 95–102
Gillis, L.G; Zimmer, M.; Bouma, T.J. (2016). Mangrove leaf transportation: Do mimic Avicennia and Rhizophora roots retain or donate leaves? Mar. Ecol. Prog. Ser. 551: 107-115. dx.doi.org/10.3354/meps11734
Gonzalez-Ortiz, V., Egea, L.G., Jimenez-Ramos, R., Moreno-Marin, F., Perez-Llorens, J.L., Bouma, T.J., and Brun, F.G., 2014. Interactions between Seagrass Complexity, Hydrodynamic Flow and Biomixing Alter Food Availability for Associated Filter-Feeding Organisms. Plos One 9.
Hendriks IE, Sintes T, Bouma TJ, Duarte CM (2008) Experimental assessment and modeling evaluation of the effects of seagrass (P. oceanica) on flow and particle trapping. Marine Ecol. Prog. Ser. 356: 163-173.
Hendriks IE, Bouma TJ, Morris EP, Duarte CM (2010) Effects of seagrasses and algae of the Caulerpa family on hydrodynamics and particle-trapping rates. Mar Biol. 157: 473-481 ( DOI 10.1007/s00227-009-1333-8)
Hendriks IE, Cabanellas-Reboredo M, Bouma TJ, Deudero S, Duarte CM. (2011) Seagrass meadows modify drag forces on the shell of the fan mussel, Pinna nobilis. Estuaries and Coasts. 34: 60-67. DOI 10.1007/s12237-010-9309-y
Heuner M, Silinski A, Schoelynck J, Bouma TJ, Puijalon S, Troch P, Fuchs E, Schroeder B, Schroeder U, Meire P, Temmerman S (2015) Ecosystem Engineering by Plants on Wave-Exposed Intertidal Flats Is Governed by Relationships between Effect and Response Traits. PLoS ONE Vol. 10, e0138086
Infantes E, Orfila A, Bouma TJ, Simarro G, Terradosa J (2011) Posidonia oceanica and Cymodocea nodosa seedling tolerance to wave exposure. Limnol. Oceanogr. 56: 2223–2232
Morris EP, Peralta G, Brun FG, van Duren LA, Bouma TJ, Pérez-Lloréns JL (2008) Interaction between hydrodynamics and seagrass canopy structure: Spatially explicit affects on ammonium uptake rates. Limnology Oceanography 53: 1531-1539.
Morris, EP, Peralta, G, Brun, FG, van Duren, L, Bouma, TJ, Perez-Llorens, JL (2008) Erratum: Interaction between hydrodynamics and seagrass canopy structure: Spatially explicit effects on ammonium uptake rates. Limnology and Oceanography 53: 2056.
Paul M, Bouma TJ, Amos CL (2012) Wave attenuation by submerged vegetation: combining the effect of organism traits and tidal current. Mar Ecol Prog Ser. 444: 31–41
Peralta G, van Duren LA, Morris EP, Bouma TJ (2008) Consequences of shoot density and stiffness for ecosystem engineering by benthic macrophytes in flow dominated areas: a hydrodynamic flume study. Marine Ecology Progress Series 368: 103-115.
Puijalon S, Bouma TJ, Douady CJ, van Groenendael J, Anten NPR, Martel E, Bornette G (2011) Plant resistance to mechanical stress: evidence of an avoidance–tolerance trade-off. New Phytologist 191: 1141–1149 doi: 10.1111/j.1469-8137.2011.03763.x
Van der Stocken T, De Ryck DJR, Balke T, Bouma TJ, Dahdouh-Guebas F, Koedam N (2013) The role of wind in hydrochorous mangrove propagule dispersal. Biogeosciences 10: 3635-3647.
Van der Stocken T, Vanschoenwinkel B, De Ryck DJR, Bouma TJ, Dahdouh-Guebas F, Koedam N (2015) Interaction between Water and Wind as a Driver of Passive Dispersal in Mangroves. PLoS ONE Vol. 10, e0121593
Van der Stocken T, De Ryck DJR, Vanschoenwinkel B, Deboelpaep E, Bouma TJ, Dahdouh-Guebas F, Koedam N (2015) Impact of landscape structure on propagule dispersal in mangrove forests. Marine Ecology Progress Series 524: 95-106
van Wesenbeeck BK, van de Koppel J, Herman PMJ, Bouma TJ (2008) Does scale-dependent feedback explain spatial complexity in salt-marsh ecosystems. OIKOS 117: 152-159.